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SEZ6
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  • TISSUE

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  • SEZ6
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:69.7 nTPM
FANTOM5:267.1 Scaled Tags Per Million
Pig:70.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA011777
Glial cells High
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.7
Samples: 300

Max nTPM: 160.3
Min nTPM: 0.9
Std nTPM: 37.4
Median nTPM: 70.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 160.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 157.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 148.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 145.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 138.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 137.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 135.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 135.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 135.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 135.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 135.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 135.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 134.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 132.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 132.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 130.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 130.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 130.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 129.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 129.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 129.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 128.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 127.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 127.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 126.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 126.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 126.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 121.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 120.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 120.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 119.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 119.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 118.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 118.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 118.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 118.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 116.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 116.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 112.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 112.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 111.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 111.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 110.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 110.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 110.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 109.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 109.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 108.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 108.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 108.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 108.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 108.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 107.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 106.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 106.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 105.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 104.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 104.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 103.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 103.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 102.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 102.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 102.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 102.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 101.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 101.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 101.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 100.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 100.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 100.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 100.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 100.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 100.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 99.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 98.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 98.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 98.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 97.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 96.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 96.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 96.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 96.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 94.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 94.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 94.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 94.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 94.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 94.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 93.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 93.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 92.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 92.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 92.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 92.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 91.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 91.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 90.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 90.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 90.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 90.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 90.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 89.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 89.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 89.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 89.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 88.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 88.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 88.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 87.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 86.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 86.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 85.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 85.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 85.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 85.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 84.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 84.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 84.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 84.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 83.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 83.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 83.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 83.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 82.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 81.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 81.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 80.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 79.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 77.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 77.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 77.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 76.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 76.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 76.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 75.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 75.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 75.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 75.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 74.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 74.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 74.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 73.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 73.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 72.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 72.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 72.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 71.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 71.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 71.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 71.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 70.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 69.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 69.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 68.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 68.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 68.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 68.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 67.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 67.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 66.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 66.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 66.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 65.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 65.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 64.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 64.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 64.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 63.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 63.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 62.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 61.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 60.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 60.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 60.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 60.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 59.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 59.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 58.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 58.2
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 57.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 57.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 56.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 56.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 56.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 56.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 55.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 55.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 55.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 54.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 54.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 53.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 51.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 51.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 51.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 51.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 50.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 49.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 49.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 49.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 48.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 48.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 47.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 47.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 47.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 46.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 45.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 45.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 45.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 45.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 45.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 44.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 44.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 44.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 41.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 41.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 41.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 41.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 41.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 39.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 39.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 39.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 39.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 38.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 37.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 37.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 36.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 36.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 36.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 36.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 35.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 35.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 35.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 35.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 34.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 34.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 33.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 33.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 32.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 31.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 31.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 30.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 30.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 30.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 30.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 28.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 28.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 27.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 27.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 25.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 25.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 25.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 24.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 23.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 23.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 23.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 23.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 23.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 23.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 22.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 22.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 22.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 22.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 22.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 21.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 21.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 21.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 20.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 20.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 20.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 20.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 20.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 20.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 19.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 19.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 18.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 18.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 17.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 17.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 17.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 16.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 15.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 15.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 14.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 13.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 11.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 11.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 9.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 9.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 7.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 7.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 6.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 5.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 5.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 5.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 5.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 4.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 4.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 2.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 0.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

267.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 267.1
FF:10164-103B2 76 years, female 267.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.7
Pig sample Sample description nTPM
Caudate
nTPM: 70.7
Samples: 4

Max nTPM: 90.5
Min nTPM: 43.5
Sample A Female 43.5
Sample B Female 68.0
Sample C Male 90.5
Sample D Male 80.8

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