HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.0 nTPM
HPA Brain:52.0 nTPM
GTEx:38.0 nTPM
FANTOM5:39.9 Scaled Tags Per Million
Pig:31.3 nTPM
Mouse:12.4 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 52.0
Sample id Sample description nTPM
Hippocampus
nTPM: 52.0
2621 Female, age 67, right hemisphere 70.6
1898 Male, age 80, left hemisphere 54.1
2148 Female, age 91, left hemisphere 49.1
1911 Female, age 85, right hemisphere 48.0
1855 Male, age 76, left hemisphere 45.7
2529 Female, age 94, left hemisphere 44.7
Dentate gyrus
nTPM: 45.8
2530 Female, age 94, left hemisphere 54.9
1927 Female, age 91, both hemispheres 50.9
2531 Female, age 67, both hemispheres 44.5
2528 Male, age 74, both hemispheres 43.2
2010 Male, age 76, both hemispheres 42.5
2246 Female, age 85, both hemispheres 38.8
Entorhinal gyrus
nTPM: 32.3
2117 Female, age 91, right hemisphere 37.4
2686 Male, age 75, right hemisphere 34.3
2764 Male, age 80, right hemisphere 33.6
1938 Female, age 85, left hemisphere 30.5
2613 Female, age 94, left hemisphere 29.8
1787 Male, age 76, left hemisphere 28.2
Hippocampus, CA1
nTPM: 44.2
2749 Male, age 80, left hemisphere 63.5
1873 Female, age 85, both hemispheres 53.9
2527 Male, age 74, both hemispheres 50.6
2082 Female, age 91, right hemisphere 31.0
2045 Male, age 76, both hemispheres 21.9
Hippocampus, CA2
nTPM: 50.6
1963 Male, age 80, left hemisphere 101.2
2437 Female, age 94, left hemisphere 48.2
1892 Male, age 76, both hemispheres 46.3
2249 Male, age 74, both hemispheres 42.5
2113 Female, age 91, right hemisphere 38.9
1940 Female, age 85, left hemisphere 26.4
Hippocampus, CA3
nTPM: 44.6
2861 Female, age 67, both hemispheres 70.0
2137 Male, age 80, left hemisphere 45.3
1867 Male, age 76, both hemispheres 39.3
1891 Female, age 85, both hemispheres 38.6
2436 Male, age 74, both hemispheres 37.9
2620 Female, age 94, left hemisphere 36.8
Parahippocampal cortex
nTPM: 30.7
2245 Female, age 91, both hemispheres 44.3
2622 Female, age 67, right hemisphere 35.2
1990 Female, age 91, right hemisphere 32.4
2692 Male, age 74, both hemispheres 29.9
1933 Female, age 85, both hemispheres 29.6
2532 Female, age 72, left hemisphere 29.1
2250 Female, age 67, right hemisphere 28.3
1850 Male, age 80, both hemispheres 27.4
2693 Female, age 94, both hemispheres 26.8
2018 Male, age 76, both hemispheres 24.4
Perirhinal gyrus
nTPM: 28.1
1794 Male, age 80, right hemisphere 31.6
1847 Female, age 91, left hemisphere 29.2
1841 Female, age 85, right hemisphere 28.6
2521 Female, age 94, right hemisphere 27.1
2848 Male, age 76, right hemisphere 24.0
Subiculum
nTPM: 38.1
2438 Female, age 94, left hemisphere 45.8
1901 Male, age 80, both hemispheres 42.0
2729 Female, age 91, right hemisphere 38.0
2619 Male, age 74, both hemispheres 37.1
2042 Male, age 76, both hemispheres 36.4
1977 Female, age 85, both hemispheres 29.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 38.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.0
Samples: 255

Max nTPM: 118.2
Min nTPM: 11.7
Std nTPM: 17.3
Median nTPM: 35.0
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 118.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 100.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 91.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 86.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 84.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 79.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 77.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 77.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 76.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 76.3
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 72.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 39.9
FF:10153-102I9 76 years, female 41.4
FF:10169-103B7 60 years, female 38.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 31.3
Pig sample Sample description nTPM
Subiculum
nTPM: 28.4
Samples: 4

Max nTPM: 34.4
Min nTPM: 24.9
Sample A Female 34.4
Sample B Female 24.9
Sample C Male 28.8
Sample D Male 25.4
Dorsal hippocampus
nTPM: 30.8
Samples: 4

Max nTPM: 39.2
Min nTPM: 24.1
Sample A Female 39.2
Sample B Female 30.6
Sample C Male 29.4
Sample D Male 24.1
Entorhinal cortex
nTPM: 28.4
Samples: 4

Max nTPM: 33.1
Min nTPM: 24.6
Sample A Female 29.7
Sample B Female 24.6
Sample C Male 33.1
Sample D Male 26.2
Ventral hippocampus
nTPM: 31.3
Samples: 4

Max nTPM: 41.4
Min nTPM: 21.3
Sample A Female 29.0
Sample B Female 21.3
Sample C Male 41.4
Sample D Male 33.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 12.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.2
Samples: 4

Max nTPM: 10.7
Min nTPM: 9.6
Sample A Male 10.1
Sample B Male 10.4
Sample C Female 9.6
Sample D Female 10.7
Hippocampal formation
nTPM: 12.4
Samples: 4

Max nTPM: 14.1
Min nTPM: 10.3
Sample A Male 10.3
Sample B Male 12.8
Sample C Female 14.1
Sample D Female 12.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.0
69079997 Antisense, RP_050324_01_B09, Mouse strain C57BL/6J (56 days, male) 4.0

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