MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.8 nTPM
HPA Brain:38.2 nTPM
GTEx:51.8 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:36.3 nTPM
Mouse:6.1 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.6
2411 Female, age 72, unknown 38.7
1833 Male, age 53, unknown 36.9
2586 Male, age 75, left hemisphere 36.1
2219 Male, age 76, both hemispheres 33.6
1870 Female, age 42, unknown 30.0
2828 Female, age 72, unknown 29.5
1830 Male, age 51, unknown 29.1
1827 Male, age 72, unknown 28.8
2019 Male, age 18, unknown 26.9
2666 Male, age 74, left hemisphere 26.0
Dorsal raphe nucleus
nTPM: 37.3
2298 Female, age 72, unknown 44.5
2047 Male, age 72, unknown 38.5
2750 Male, age 76, both hemispheres 36.4
1828 Male, age 53, unknown 35.0
2016 Female, age 72, unknown 32.0
Inferior colliculus
nTPM: 29.9
1848 Female, age 42, unknown 31.3
2097 Female, age 72, unknown 31.1
2849 Male, age 72, unknown 29.9
1890 Male, age 53, unknown 27.4
Median raphe nucleus
nTPM: 38.2
2220 Male, age 76, midline 38.2
Periaquaductal grey, anterior
nTPM: 36.1
1947 Male, age 18, unknown 44.3
1795 Male, age 51, unknown 33.1
2502 Female, age 75, unknown 30.9
Periaquaductal grey, dorsal
nTPM: 28.2
1840 Male, age 53, unknown 31.8
2850 Male, age 76, both hemispheres 30.1
2464 Female, age 72, unknown 28.0
1831 Male, age 72, unknown 22.9
Periaquaductal grey, lateral
nTPM: 29.0
2272 Male, age 74, both hemispheres 34.1
2140 Male, age 76, both hemispheres 26.7
2053 Male, age 18, unknown 26.4
Pretectal area
nTPM: 28.7
2825 Male, age 18, unknown 33.0
2667 Female, age 75, unknown 31.8
2224 Female, age 72, unknown 30.4
2273 Male, age 74, both hemispheres 30.2
2007 Male, age 72, unknown 29.8
1817 Female, age 42, unknown 28.7
1815 Male, age 53, unknown 27.8
2316 Male, age 76, right hemisphere 27.2
1816 Male, age 51, unknown 25.9
1944 Female, age 72, unknown 25.6
2407 Male, age 75, both hemispheres 25.0
Red nucleus
nTPM: 32.9
1954 Female, age 42, unknown 37.3
1821 Female, age 72, unknown 37.1
2227 Male, age 72, unknown 35.9
2769 Male, age 72, unknown 35.9
2725 Female, age 75, unknown 34.7
1904 Male, age 53, unknown 33.8
2503 Female, age 72, unknown 33.7
2588 Male, age 74, left hemisphere 32.0
1865 Male, age 51, unknown 30.4
2823 Male, age 76, right hemisphere 28.7
2584 Male, age 75, left hemisphere 28.5
2785 Male, age 18, unknown 27.1
Substantia nigra
nTPM: 36.6
1916 Female, age 42, unknown 49.0
1851 Male, age 51, unknown 45.0
2699 Male, age 18, unknown 37.6
2241 Male, age 72, unknown 36.7
1941 Male, age 53, unknown 34.0
2409 Female, age 72, unknown 33.3
2583 Male, age 75, right hemisphere 33.3
1889 Female, age 72, unknown 33.2
2665 Male, age 74, both hemispheres 32.5
2590 Female, age 75, unknown 31.1
Superior colliculus
nTPM: 26.8
1839 Male, age 51, unknown 30.8
2668 Female, age 75, unknown 30.4
1796 Male, age 53, unknown 29.9
2587 Male, age 74, left hemisphere 28.0
2261 Male, age 18, unknown 27.4
2087 Female, age 72, unknown 27.1
1995 Male, age 72, unknown 26.7
2664 Male, age 75, both hemispheres 23.9
1913 Female, age 42, unknown 22.6
1895 Male, age 76, right hemisphere 21.6
Ventral tegmental area
nTPM: 36.7
2410 Female, age 72, unknown 43.5
1915 Female, age 42, unknown 40.5
2218 Male, age 76, both hemispheres 37.2
1942 Male, age 51, unknown 34.8
2223 Female, age 72, unknown 34.6
2021 Male, age 53, unknown 29.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.8
Samples: 183

Max nTPM: 101.9
Min nTPM: 25.9
Std nTPM: 13.5
Median nTPM: 49.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 101.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 89.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 88.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 84.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 80.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 80.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 79.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 76.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 76.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 76.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 74.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.5
FF:10158-103A5 76 years, female 49.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.8
Samples: 4

Max nTPM: 39.1
Min nTPM: 26.9
Sample A Female 39.1
Sample B Female 26.9
Sample C Male 28.5
Sample D Male 32.6
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 61.4
Min nTPM: 26.0
Sample A Female 61.4
Sample B Female 30.2
Sample C Male 26.0
Sample D Male 27.6
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 27.0
Min nTPM: 21.9
Sample B Female 27.0
Sample C Male 25.1
Sample D Male 21.9
Superior colliculi
nTPM: 33.2
Samples: 4

Max nTPM: 42.0
Min nTPM: 28.1
Sample A Female 42.0
Sample B Female 28.1
Sample C Male 30.1
Sample D Male 32.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.4
Sample A Male 6.2
Sample B Male 6.0
Sample C Female 5.4
Sample D Female 6.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
69262328 Antisense, RP_050303_02_A10, Mouse strain C57BL/6J (56 days, male) 1.2

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