MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.5 nTPM
HPA Brain:218.4 nTPM
GTEx:72.5 nTPM
FANTOM5:270.8 Scaled Tags Per Million
Pig:151.8 nTPM
Mouse:34.1 nTPM
Allen mouse:2.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 218.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 175.6
1833 Male, age 53, unknown 201.3
1830 Male, age 51, unknown 197.4
2586 Male, age 75, left hemisphere 193.7
2666 Male, age 74, left hemisphere 191.4
2411 Female, age 72, unknown 185.1
1870 Female, age 42, unknown 179.1
2019 Male, age 18, unknown 176.9
2828 Female, age 72, unknown 156.8
1827 Male, age 72, unknown 138.0
2219 Male, age 76, both hemispheres 136.5
Dorsal raphe nucleus
nTPM: 164.5
2750 Male, age 76, both hemispheres 192.2
2016 Female, age 72, unknown 179.3
2047 Male, age 72, unknown 157.9
1828 Male, age 53, unknown 155.9
2298 Female, age 72, unknown 137.1
Inferior colliculus
nTPM: 150.2
2849 Male, age 72, unknown 163.6
1890 Male, age 53, unknown 153.1
1848 Female, age 42, unknown 149.2
2097 Female, age 72, unknown 134.9
Median raphe nucleus
nTPM: 143.1
2220 Male, age 76, midline 143.1
Periaquaductal grey, anterior
nTPM: 134.2
2502 Female, age 75, unknown 155.4
1947 Male, age 18, unknown 131.7
1795 Male, age 51, unknown 115.5
Periaquaductal grey, dorsal
nTPM: 133.4
2464 Female, age 72, unknown 155.4
1840 Male, age 53, unknown 136.9
2850 Male, age 76, both hemispheres 121.2
1831 Male, age 72, unknown 120.3
Periaquaductal grey, lateral
nTPM: 126.9
2053 Male, age 18, unknown 139.8
2272 Male, age 74, both hemispheres 123.3
2140 Male, age 76, both hemispheres 117.6
Pretectal area
nTPM: 129.9
1815 Male, age 53, unknown 153.9
2825 Male, age 18, unknown 147.5
2316 Male, age 76, right hemisphere 146.9
2407 Male, age 75, both hemispheres 145.4
1817 Female, age 42, unknown 136.7
2224 Female, age 72, unknown 125.6
2007 Male, age 72, unknown 121.6
2667 Female, age 75, unknown 116.7
2273 Male, age 74, both hemispheres 116.6
1944 Female, age 72, unknown 114.1
1816 Male, age 51, unknown 104.3
Red nucleus
nTPM: 218.4
1865 Male, age 51, unknown 254.1
1904 Male, age 53, unknown 247.7
2823 Male, age 76, right hemisphere 236.2
1821 Female, age 72, unknown 235.2
2227 Male, age 72, unknown 230.5
2503 Female, age 72, unknown 225.1
2769 Male, age 72, unknown 222.2
1954 Female, age 42, unknown 215.4
2588 Male, age 74, left hemisphere 201.0
2785 Male, age 18, unknown 193.2
2725 Female, age 75, unknown 186.5
2584 Male, age 75, left hemisphere 173.9
Substantia nigra
nTPM: 168.6
2699 Male, age 18, unknown 186.3
2409 Female, age 72, unknown 181.9
2241 Male, age 72, unknown 179.9
1851 Male, age 51, unknown 178.0
2583 Male, age 75, right hemisphere 173.9
2590 Female, age 75, unknown 172.9
2665 Male, age 74, both hemispheres 168.6
1916 Female, age 42, unknown 162.3
1889 Female, age 72, unknown 147.6
1941 Male, age 53, unknown 134.3
Superior colliculus
nTPM: 153.5
1995 Male, age 72, unknown 182.1
1913 Female, age 42, unknown 177.6
1895 Male, age 76, right hemisphere 170.3
2587 Male, age 74, left hemisphere 169.9
2668 Female, age 75, unknown 162.5
1839 Male, age 51, unknown 160.1
2664 Male, age 75, both hemispheres 142.9
1796 Male, age 53, unknown 135.5
2261 Male, age 18, unknown 121.0
2087 Female, age 72, unknown 113.5
Ventral tegmental area
nTPM: 161.4
2223 Female, age 72, unknown 197.0
2410 Female, age 72, unknown 174.9
1915 Female, age 42, unknown 153.8
1942 Male, age 51, unknown 153.7
2218 Male, age 76, both hemispheres 147.5
2021 Male, age 53, unknown 141.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.5
Samples: 183

Max nTPM: 186.1
Min nTPM: 16.3
Std nTPM: 25.1
Median nTPM: 70.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 186.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 126.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 122.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 121.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 120.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 119.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 119.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 118.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 118.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 118.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 114.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 270.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 270.8
FF:10158-103A5 76 years, female 270.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 151.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 143.6
Samples: 4

Max nTPM: 204.3
Min nTPM: 114.1
Sample A Female 126.0
Sample B Female 114.1
Sample C Male 130.0
Sample D Male 204.3
Midbrain
nTPM: 151.8
Samples: 4

Max nTPM: 211.3
Min nTPM: 123.9
Sample A Female 211.3
Sample B Female 144.7
Sample C Male 127.4
Sample D Male 123.9
Periaqueductal gray
nTPM: 118.0
Samples: 3

Max nTPM: 136.5
Min nTPM: 105.9
Sample B Female 136.5
Sample C Male 105.9
Sample D Male 111.5
Superior colliculi
nTPM: 125.7
Samples: 4

Max nTPM: 150.6
Min nTPM: 79.4
Sample A Female 134.7
Sample B Female 79.4
Sample C Male 137.9
Sample D Male 150.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 36.8
Min nTPM: 31.0
Sample A Male 31.0
Sample B Male 33.6
Sample C Female 36.8
Sample D Female 35.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69407534 Antisense, RP_050414_01_H02, Mouse strain C57BL/6J (56 days, male) 2.2
71249084 Antisense, RP_050414_01_H02, Mouse strain C57BL/6J (56 days, male) 0.4

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