HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:37.9 nTPM
HPA Brain:82.6 nTPM
GTEx:37.9 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:36.2 nTPM
Mouse:35.8 nTPM
Allen mouse:11.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041557Antibody HPA061111
Glial cells MediumNot detected
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 82.6
Sample id Sample description nTPM
Hippocampus
nTPM: 70.0
2148 Female, age 91, left hemisphere 80.2
2621 Female, age 67, right hemisphere 73.6
1911 Female, age 85, right hemisphere 70.1
1855 Male, age 76, left hemisphere 69.5
1898 Male, age 80, left hemisphere 67.5
2529 Female, age 94, left hemisphere 59.2
Dentate gyrus
nTPM: 72.0
2531 Female, age 67, both hemispheres 86.7
1927 Female, age 91, both hemispheres 81.9
2246 Female, age 85, both hemispheres 70.4
2528 Male, age 74, both hemispheres 68.9
2010 Male, age 76, both hemispheres 65.6
2530 Female, age 94, left hemisphere 58.4
Entorhinal gyrus
nTPM: 65.9
2686 Male, age 75, right hemisphere 69.9
2613 Female, age 94, left hemisphere 69.5
2764 Male, age 80, right hemisphere 69.4
1938 Female, age 85, left hemisphere 63.9
1787 Male, age 76, left hemisphere 62.5
2117 Female, age 91, right hemisphere 60.1
Hippocampus, CA1
nTPM: 74.3
2749 Male, age 80, left hemisphere 89.6
2045 Male, age 76, both hemispheres 72.4
1873 Female, age 85, both hemispheres 70.2
2527 Male, age 74, both hemispheres 69.9
2082 Female, age 91, right hemisphere 69.2
Hippocampus, CA2
nTPM: 69.1
1892 Male, age 76, both hemispheres 77.3
1940 Female, age 85, left hemisphere 72.8
1963 Male, age 80, left hemisphere 71.3
2113 Female, age 91, right hemisphere 69.1
2249 Male, age 74, both hemispheres 66.6
2437 Female, age 94, left hemisphere 57.2
Hippocampus, CA3
nTPM: 82.6
2620 Female, age 94, left hemisphere 99.2
2137 Male, age 80, left hemisphere 92.9
2861 Female, age 67, both hemispheres 81.4
2436 Male, age 74, both hemispheres 79.5
1867 Male, age 76, both hemispheres 76.5
1891 Female, age 85, both hemispheres 66.2
Parahippocampal cortex
nTPM: 69.7
2622 Female, age 67, right hemisphere 82.4
2245 Female, age 91, both hemispheres 75.3
2693 Female, age 94, both hemispheres 73.4
2250 Female, age 67, right hemisphere 69.4
2532 Female, age 72, left hemisphere 68.8
1933 Female, age 85, both hemispheres 68.0
1850 Male, age 80, both hemispheres 66.8
2692 Male, age 74, both hemispheres 65.8
1990 Female, age 91, right hemisphere 64.9
2018 Male, age 76, both hemispheres 62.5
Perirhinal gyrus
nTPM: 72.1
2521 Female, age 94, right hemisphere 81.3
1847 Female, age 91, left hemisphere 71.8
1841 Female, age 85, right hemisphere 70.7
1794 Male, age 80, right hemisphere 70.3
2848 Male, age 76, right hemisphere 66.3
Subiculum
nTPM: 64.2
2729 Female, age 91, right hemisphere 69.6
1901 Male, age 80, both hemispheres 67.3
2619 Male, age 74, both hemispheres 66.8
1977 Female, age 85, both hemispheres 61.3
2438 Female, age 94, left hemisphere 60.3
2042 Male, age 76, both hemispheres 59.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 37.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.9
Samples: 255

Max nTPM: 72.3
Min nTPM: 15.6
Std nTPM: 9.9
Median nTPM: 37.3
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 72.3
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 71.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 66.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 64.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 64.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 61.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 59.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 59.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 58.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 58.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 57.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 84.2
FF:10169-103B7 60 years, female 87.2
FF:10153-102I9 76 years, female 81.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 36.2
Pig sample Sample description nTPM
Subiculum
nTPM: 32.6
Samples: 4

Max nTPM: 36.8
Min nTPM: 28.5
Sample A Female 36.8
Sample B Female 31.8
Sample C Male 33.1
Sample D Male 28.5
Dorsal hippocampus
nTPM: 36.3
Samples: 4

Max nTPM: 39.3
Min nTPM: 32.9
Sample A Female 38.4
Sample B Female 39.3
Sample C Male 32.9
Sample D Male 34.4
Entorhinal cortex
nTPM: 33.1
Samples: 4

Max nTPM: 35.3
Min nTPM: 31.2
Sample A Female 33.8
Sample B Female 35.3
Sample C Male 32.1
Sample D Male 31.2
Ventral hippocampus
nTPM: 34.9
Samples: 4

Max nTPM: 39.0
Min nTPM: 32.6
Sample A Female 34.4
Sample B Female 32.6
Sample C Male 39.0
Sample D Male 33.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 35.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.8
Samples: 4

Max nTPM: 38.5
Min nTPM: 33.7
Sample A Male 33.9
Sample B Male 37.1
Sample C Female 33.7
Sample D Female 38.5
Hippocampal formation
nTPM: 34.6
Samples: 4

Max nTPM: 36.9
Min nTPM: 31.1
Sample A Male 34.4
Sample B Male 36.9
Sample C Female 31.1
Sample D Female 35.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 11.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.6
69549629 Antisense, RP_050301_01_E02, Mouse strain C57BL/6J (56 days, male) 11.6

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