MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.0 nTPM
HPA Brain:56.2 nTPM
GTEx:39.0 nTPM
FANTOM5:48.3 Scaled Tags Per Million
Pig:64.2 nTPM
Mouse:93.2 nTPM
Allen mouse:3.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.8
2019 Male, age 18, unknown 64.4
2586 Male, age 75, left hemisphere 64.0
1870 Female, age 42, unknown 50.7
2411 Female, age 72, unknown 50.2
2828 Female, age 72, unknown 49.0
2666 Male, age 74, left hemisphere 48.5
1827 Male, age 72, unknown 48.4
1833 Male, age 53, unknown 46.9
1830 Male, age 51, unknown 46.8
2219 Male, age 76, both hemispheres 39.3
Dorsal raphe nucleus
nTPM: 48.0
2298 Female, age 72, unknown 53.9
2016 Female, age 72, unknown 48.2
2750 Male, age 76, both hemispheres 47.9
1828 Male, age 53, unknown 45.7
2047 Male, age 72, unknown 44.0
Inferior colliculus
nTPM: 53.5
2097 Female, age 72, unknown 59.4
1890 Male, age 53, unknown 55.1
1848 Female, age 42, unknown 52.7
2849 Male, age 72, unknown 46.9
Median raphe nucleus
nTPM: 46.2
2220 Male, age 76, midline 46.2
Periaquaductal grey, anterior
nTPM: 54.4
2502 Female, age 75, unknown 63.8
1947 Male, age 18, unknown 50.4
1795 Male, age 51, unknown 48.8
Periaquaductal grey, dorsal
nTPM: 47.5
1840 Male, age 53, unknown 50.8
2464 Female, age 72, unknown 48.3
1831 Male, age 72, unknown 45.6
2850 Male, age 76, both hemispheres 45.5
Periaquaductal grey, lateral
nTPM: 45.9
2272 Male, age 74, both hemispheres 50.3
2053 Male, age 18, unknown 45.0
2140 Male, age 76, both hemispheres 42.5
Pretectal area
nTPM: 56.2
2007 Male, age 72, unknown 70.6
1816 Male, age 51, unknown 69.9
1817 Female, age 42, unknown 66.9
1944 Female, age 72, unknown 62.3
1815 Male, age 53, unknown 62.0
2667 Female, age 75, unknown 54.7
2273 Male, age 74, both hemispheres 52.3
2224 Female, age 72, unknown 51.4
2316 Male, age 76, right hemisphere 45.8
2825 Male, age 18, unknown 41.8
2407 Male, age 75, both hemispheres 40.6
Red nucleus
nTPM: 55.9
1821 Female, age 72, unknown 63.5
2785 Male, age 18, unknown 62.2
2503 Female, age 72, unknown 60.3
1865 Male, age 51, unknown 59.6
1904 Male, age 53, unknown 58.2
1954 Female, age 42, unknown 58.0
2227 Male, age 72, unknown 56.8
2769 Male, age 72, unknown 55.5
2725 Female, age 75, unknown 51.1
2588 Male, age 74, left hemisphere 48.9
2823 Male, age 76, right hemisphere 48.3
2584 Male, age 75, left hemisphere 47.6
Substantia nigra
nTPM: 51.0
1889 Female, age 72, unknown 60.2
2583 Male, age 75, right hemisphere 55.1
1851 Male, age 51, unknown 54.6
1916 Female, age 42, unknown 53.9
2241 Male, age 72, unknown 52.5
2665 Male, age 74, both hemispheres 50.0
2409 Female, age 72, unknown 49.3
1941 Male, age 53, unknown 47.3
2590 Female, age 75, unknown 44.6
2699 Male, age 18, unknown 43.2
Superior colliculus
nTPM: 52.7
2261 Male, age 18, unknown 62.0
2087 Female, age 72, unknown 57.7
2668 Female, age 75, unknown 55.6
2664 Male, age 75, both hemispheres 53.9
1913 Female, age 42, unknown 53.3
1995 Male, age 72, unknown 52.1
1796 Male, age 53, unknown 51.8
2587 Male, age 74, left hemisphere 50.6
1839 Male, age 51, unknown 46.8
1895 Male, age 76, right hemisphere 43.2
Ventral tegmental area
nTPM: 50.3
2410 Female, age 72, unknown 59.7
2223 Female, age 72, unknown 56.2
2218 Male, age 76, both hemispheres 47.3
2021 Male, age 53, unknown 47.2
1915 Female, age 42, unknown 45.8
1942 Male, age 51, unknown 45.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 39.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.0
Samples: 183

Max nTPM: 62.1
Min nTPM: 22.8
Std nTPM: 6.9
Median nTPM: 38.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 62.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 57.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 56.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 55.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 55.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 54.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 51.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 51.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 51.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 51.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.3
FF:10158-103A5 76 years, female 48.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 64.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.2
Samples: 4

Max nTPM: 61.6
Min nTPM: 38.8
Sample A Female 61.6
Sample B Female 38.8
Sample C Male 44.3
Sample D Male 44.2
Midbrain
nTPM: 64.2
Samples: 4

Max nTPM: 87.1
Min nTPM: 42.9
Sample A Female 64.7
Sample B Female 42.9
Sample C Male 87.1
Sample D Male 62.0
Periaqueductal gray
nTPM: 38.4
Samples: 3

Max nTPM: 38.9
Min nTPM: 37.5
Sample B Female 38.9
Sample C Male 37.5
Sample D Male 38.7
Superior colliculi
nTPM: 62.4
Samples: 4

Max nTPM: 75.5
Min nTPM: 41.7
Sample A Female 68.4
Sample B Female 41.7
Sample C Male 75.5
Sample D Male 64.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 93.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.2
Samples: 4

Max nTPM: 95.9
Min nTPM: 88.2
Sample A Male 88.2
Sample B Male 95.9
Sample C Female 94.6
Sample D Female 94.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
70298214 Antisense, RP_050602_01_E03, Mouse strain C57BL/6J (56 days, male) 5.9
71723869 Antisense, RP_050921_01_A10, Mouse strain C57BL/6J (56 days, male) 0.1

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