HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.0 nTPM
HPA Brain:97.9 nTPM
GTEx:36.0 nTPM
FANTOM5:95.5 Scaled Tags Per Million
Pig:40.4 nTPM
Mouse:63.1 nTPM
Allen mouse:9.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 97.9
Sample id Sample description nTPM
Hippocampus
nTPM: 94.7
1855 Male, age 76, left hemisphere 101.1
2621 Female, age 67, right hemisphere 100.2
2148 Female, age 91, left hemisphere 97.9
1898 Male, age 80, left hemisphere 97.8
2529 Female, age 94, left hemisphere 91.2
1911 Female, age 85, right hemisphere 80.2
Dentate gyrus
nTPM: 89.6
1927 Female, age 91, both hemispheres 100.9
2530 Female, age 94, left hemisphere 97.2
2531 Female, age 67, both hemispheres 88.9
2010 Male, age 76, both hemispheres 86.9
2246 Female, age 85, both hemispheres 82.8
2528 Male, age 74, both hemispheres 81.0
Entorhinal gyrus
nTPM: 87.4
2613 Female, age 94, left hemisphere 102.3
1938 Female, age 85, left hemisphere 90.3
2764 Male, age 80, right hemisphere 89.9
1787 Male, age 76, left hemisphere 89.7
2686 Male, age 75, right hemisphere 77.3
2117 Female, age 91, right hemisphere 74.5
Hippocampus, CA1
nTPM: 97.9
2749 Male, age 80, left hemisphere 135.9
1873 Female, age 85, both hemispheres 95.1
2527 Male, age 74, both hemispheres 90.8
2045 Male, age 76, both hemispheres 89.9
2082 Female, age 91, right hemisphere 77.6
Hippocampus, CA2
nTPM: 89.7
1963 Male, age 80, left hemisphere 112.3
1892 Male, age 76, both hemispheres 105.3
2437 Female, age 94, left hemisphere 90.0
2113 Female, age 91, right hemisphere 79.2
2249 Male, age 74, both hemispheres 78.3
1940 Female, age 85, left hemisphere 73.1
Hippocampus, CA3
nTPM: 95.8
2137 Male, age 80, left hemisphere 119.6
2861 Female, age 67, both hemispheres 103.4
2620 Female, age 94, left hemisphere 97.0
2436 Male, age 74, both hemispheres 93.6
1867 Male, age 76, both hemispheres 88.6
1891 Female, age 85, both hemispheres 72.9
Parahippocampal cortex
nTPM: 84.0
2245 Female, age 91, both hemispheres 94.7
1850 Male, age 80, both hemispheres 90.1
2622 Female, age 67, right hemisphere 89.2
2250 Female, age 67, right hemisphere 84.0
2692 Male, age 74, both hemispheres 82.9
1933 Female, age 85, both hemispheres 82.5
1990 Female, age 91, right hemisphere 82.3
2532 Female, age 72, left hemisphere 80.5
2018 Male, age 76, both hemispheres 79.2
2693 Female, age 94, both hemispheres 74.9
Perirhinal gyrus
nTPM: 92.3
1847 Female, age 91, left hemisphere 102.5
1794 Male, age 80, right hemisphere 99.5
2521 Female, age 94, right hemisphere 91.6
1841 Female, age 85, right hemisphere 85.9
2848 Male, age 76, right hemisphere 82.0
Subiculum
nTPM: 81.0
2438 Female, age 94, left hemisphere 88.1
1901 Male, age 80, both hemispheres 86.9
2619 Male, age 74, both hemispheres 81.0
1977 Female, age 85, both hemispheres 80.4
2042 Male, age 76, both hemispheres 75.9
2729 Female, age 91, right hemisphere 73.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 36.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.0
Samples: 255

Max nTPM: 75.9
Min nTPM: 13.8
Std nTPM: 9.4
Median nTPM: 35.7
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 75.9
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 68.0
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 59.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 57.9
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 57.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 56.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 56.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 55.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 54.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 54.4
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 54.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 95.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 95.5
FF:10169-103B7 60 years, female 97.6
FF:10153-102I9 76 years, female 93.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 40.4
Pig sample Sample description nTPM
Subiculum
nTPM: 40.4
Samples: 4

Max nTPM: 49.9
Min nTPM: 35.0
Sample A Female 49.9
Sample B Female 37.0
Sample C Male 39.8
Sample D Male 35.0
Dorsal hippocampus
nTPM: 38.0
Samples: 4

Max nTPM: 45.5
Min nTPM: 30.1
Sample A Female 45.5
Sample B Female 42.5
Sample C Male 33.8
Sample D Male 30.1
Entorhinal cortex
nTPM: 39.7
Samples: 4

Max nTPM: 44.7
Min nTPM: 35.7
Sample A Female 44.7
Sample B Female 37.8
Sample C Male 40.5
Sample D Male 35.7
Ventral hippocampus
nTPM: 40.2
Samples: 4

Max nTPM: 50.0
Min nTPM: 29.9
Sample A Female 40.3
Sample B Female 29.9
Sample C Male 50.0
Sample D Male 40.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 63.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 63.1
Samples: 4

Max nTPM: 80.1
Min nTPM: 56.1
Sample A Male 56.7
Sample B Male 56.1
Sample C Female 59.5
Sample D Female 80.1
Hippocampal formation
nTPM: 61.2
Samples: 4

Max nTPM: 67.5
Min nTPM: 53.6
Sample A Male 53.6
Sample B Male 63.6
Sample C Female 67.5
Sample D Female 59.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 9.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.1
68924799 Antisense, RP_050309_01_A07, Mouse strain C57BL/6J (56 days, male) 9.1

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