HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:108.6 nTPM
HPA Brain:79.6 nTPM
GTEx:108.6 nTPM
FANTOM5:69.3 Scaled Tags Per Million
Pig:38.0 nTPM
Mouse:31.9 nTPM
Allen mouse:7.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001672Antibody HPA066520
Glial cells LowNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 79.6
Sample id Sample description nTPM
Hippocampus
nTPM: 73.3
2529 Female, age 94, left hemisphere 88.0
2621 Female, age 67, right hemisphere 79.2
1898 Male, age 80, left hemisphere 76.0
1911 Female, age 85, right hemisphere 67.2
1855 Male, age 76, left hemisphere 66.8
2148 Female, age 91, left hemisphere 62.3
Dentate gyrus
nTPM: 76.1
2530 Female, age 94, left hemisphere 133.3
2010 Male, age 76, both hemispheres 76.0
2531 Female, age 67, both hemispheres 72.4
1927 Female, age 91, both hemispheres 59.7
2528 Male, age 74, both hemispheres 58.8
2246 Female, age 85, both hemispheres 56.5
Entorhinal gyrus
nTPM: 79.6
2686 Male, age 75, right hemisphere 92.4
2613 Female, age 94, left hemisphere 84.2
2764 Male, age 80, right hemisphere 83.3
2117 Female, age 91, right hemisphere 80.0
1787 Male, age 76, left hemisphere 73.1
1938 Female, age 85, left hemisphere 64.7
Hippocampus, CA1
nTPM: 59.8
2527 Male, age 74, both hemispheres 73.1
2749 Male, age 80, left hemisphere 68.0
1873 Female, age 85, both hemispheres 57.3
2082 Female, age 91, right hemisphere 53.4
2045 Male, age 76, both hemispheres 47.3
Hippocampus, CA2
nTPM: 73.9
2437 Female, age 94, left hemisphere 100.1
1963 Male, age 80, left hemisphere 98.5
1892 Male, age 76, both hemispheres 67.1
2249 Male, age 74, both hemispheres 65.5
2113 Female, age 91, right hemisphere 56.6
1940 Female, age 85, left hemisphere 55.3
Hippocampus, CA3
nTPM: 67.2
2861 Female, age 67, both hemispheres 110.1
1867 Male, age 76, both hemispheres 66.6
1891 Female, age 85, both hemispheres 64.1
2137 Male, age 80, left hemisphere 58.1
2620 Female, age 94, left hemisphere 56.9
2436 Male, age 74, both hemispheres 47.7
Parahippocampal cortex
nTPM: 68.3
2622 Female, age 67, right hemisphere 94.1
2692 Male, age 74, both hemispheres 77.2
2532 Female, age 72, left hemisphere 73.6
2245 Female, age 91, both hemispheres 72.0
1990 Female, age 91, right hemisphere 69.8
1850 Male, age 80, both hemispheres 68.0
2018 Male, age 76, both hemispheres 63.5
1933 Female, age 85, both hemispheres 60.2
2693 Female, age 94, both hemispheres 53.2
2250 Female, age 67, right hemisphere 51.1
Perirhinal gyrus
nTPM: 60.7
1794 Male, age 80, right hemisphere 70.2
1841 Female, age 85, right hemisphere 64.6
1847 Female, age 91, left hemisphere 61.6
2848 Male, age 76, right hemisphere 57.4
2521 Female, age 94, right hemisphere 49.9
Subiculum
nTPM: 77.0
2438 Female, age 94, left hemisphere 95.6
2042 Male, age 76, both hemispheres 83.7
1901 Male, age 80, both hemispheres 76.5
2619 Male, age 74, both hemispheres 76.1
1977 Female, age 85, both hemispheres 68.0
2729 Female, age 91, right hemisphere 62.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 108.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 108.6
Samples: 255

Max nTPM: 432.2
Min nTPM: 36.2
Std nTPM: 54.3
Median nTPM: 94.5
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 432.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 380.0
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 364.3
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 288.3
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 269.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 259.4
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 251.4
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 251.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 247.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 242.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 236.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 69.3
FF:10153-102I9 76 years, female 93.0
FF:10169-103B7 60 years, female 45.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 38.0
Pig sample Sample description nTPM
Subiculum
nTPM: 28.7
Samples: 4

Max nTPM: 39.7
Min nTPM: 20.8
Sample A Female 39.7
Sample B Female 20.8
Sample C Male 27.3
Sample D Male 27.1
Dorsal hippocampus
nTPM: 29.8
Samples: 4

Max nTPM: 43.1
Min nTPM: 16.6
Sample A Female 34.0
Sample B Female 25.5
Sample C Male 43.1
Sample D Male 16.6
Entorhinal cortex
nTPM: 38.0
Samples: 4

Max nTPM: 43.5
Min nTPM: 35.7
Sample A Female 35.8
Sample B Female 43.5
Sample C Male 37.1
Sample D Male 35.7
Ventral hippocampus
nTPM: 28.7
Samples: 4

Max nTPM: 41.6
Min nTPM: 18.9
Sample A Female 26.2
Sample B Female 18.9
Sample C Male 41.6
Sample D Male 27.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 31.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.7
Samples: 4

Max nTPM: 32.4
Min nTPM: 30.7
Sample A Male 32.4
Sample B Male 31.3
Sample C Female 32.3
Sample D Female 30.7
Hippocampal formation
nTPM: 31.9
Samples: 4

Max nTPM: 38.4
Min nTPM: 26.3
Sample A Male 26.3
Sample B Male 27.7
Sample C Female 35.1
Sample D Female 38.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.6
74657980 Antisense, RP_051121_03_D11, Mouse strain C57BL/6J (56 days, male) 7.6
73573187 Antisense, RP_051121_03_D11, Mouse strain C57BL/6J (56 days, male) 3.8

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