MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:84.2 nTPM
HPA Brain:79.4 nTPM
GTEx:84.2 nTPM
FANTOM5:246.0 Scaled Tags Per Million
Pig:68.8 nTPM
Mouse:115.7 nTPM
Allen mouse:2.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 79.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.7
2411 Female, age 72, unknown 84.1
1870 Female, age 42, unknown 71.2
2019 Male, age 18, unknown 70.1
1827 Male, age 72, unknown 66.9
2219 Male, age 76, both hemispheres 62.4
2828 Female, age 72, unknown 59.8
1833 Male, age 53, unknown 59.1
1830 Male, age 51, unknown 55.9
2666 Male, age 74, left hemisphere 44.2
2586 Male, age 75, left hemisphere 43.3
Dorsal raphe nucleus
nTPM: 75.5
2298 Female, age 72, unknown 99.0
2750 Male, age 76, both hemispheres 80.6
2047 Male, age 72, unknown 70.9
1828 Male, age 53, unknown 69.2
2016 Female, age 72, unknown 57.6
Inferior colliculus
nTPM: 61.9
2097 Female, age 72, unknown 78.5
1848 Female, age 42, unknown 63.3
1890 Male, age 53, unknown 55.2
2849 Male, age 72, unknown 50.4
Median raphe nucleus
nTPM: 77.2
2220 Male, age 76, midline 77.2
Periaquaductal grey, anterior
nTPM: 68.4
1947 Male, age 18, unknown 77.3
2502 Female, age 75, unknown 65.7
1795 Male, age 51, unknown 62.1
Periaquaductal grey, dorsal
nTPM: 55.5
1840 Male, age 53, unknown 60.0
2464 Female, age 72, unknown 58.8
2850 Male, age 76, both hemispheres 53.5
1831 Male, age 72, unknown 49.6
Periaquaductal grey, lateral
nTPM: 60.3
2272 Male, age 74, both hemispheres 75.4
2053 Male, age 18, unknown 56.2
2140 Male, age 76, both hemispheres 49.2
Pretectal area
nTPM: 74.6
2273 Male, age 74, both hemispheres 86.7
2007 Male, age 72, unknown 85.4
1944 Female, age 72, unknown 85.1
1816 Male, age 51, unknown 84.3
2224 Female, age 72, unknown 83.8
1817 Female, age 42, unknown 83.7
2667 Female, age 75, unknown 76.1
1815 Male, age 53, unknown 75.7
2825 Male, age 18, unknown 56.3
2316 Male, age 76, right hemisphere 52.0
2407 Male, age 75, both hemispheres 51.4
Red nucleus
nTPM: 62.8
1821 Female, age 72, unknown 84.6
2725 Female, age 75, unknown 70.5
1954 Female, age 42, unknown 66.3
1865 Male, age 51, unknown 66.1
2785 Male, age 18, unknown 65.5
2503 Female, age 72, unknown 65.3
1904 Male, age 53, unknown 63.7
2227 Male, age 72, unknown 61.3
2769 Male, age 72, unknown 60.1
2823 Male, age 76, right hemisphere 57.8
2584 Male, age 75, left hemisphere 46.7
2588 Male, age 74, left hemisphere 45.8
Substantia nigra
nTPM: 79.4
2241 Male, age 72, unknown 101.5
1916 Female, age 42, unknown 100.9
1941 Male, age 53, unknown 95.2
1889 Female, age 72, unknown 90.5
1851 Male, age 51, unknown 88.8
2409 Female, age 72, unknown 86.9
2699 Male, age 18, unknown 66.3
2590 Female, age 75, unknown 63.3
2583 Male, age 75, right hemisphere 53.4
2665 Male, age 74, both hemispheres 47.7
Superior colliculus
nTPM: 63.1
2087 Female, age 72, unknown 79.2
2587 Male, age 74, left hemisphere 72.3
2261 Male, age 18, unknown 71.7
2668 Female, age 75, unknown 66.5
1895 Male, age 76, right hemisphere 64.5
1796 Male, age 53, unknown 61.8
1913 Female, age 42, unknown 60.3
1839 Male, age 51, unknown 57.3
1995 Male, age 72, unknown 54.1
2664 Male, age 75, both hemispheres 43.5
Ventral tegmental area
nTPM: 71.9
2410 Female, age 72, unknown 88.3
1915 Female, age 42, unknown 78.4
2218 Male, age 76, both hemispheres 77.0
1942 Male, age 51, unknown 64.9
2223 Female, age 72, unknown 61.3
2021 Male, age 53, unknown 61.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 84.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.2
Samples: 183

Max nTPM: 189.3
Min nTPM: 44.2
Std nTPM: 23.2
Median nTPM: 80.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 189.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 165.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 158.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 155.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 145.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 140.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 138.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 129.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 125.9
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 123.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 121.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 246.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 246.0
FF:10158-103A5 76 years, female 246.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.6
Samples: 4

Max nTPM: 77.4
Min nTPM: 61.8
Sample A Female 77.4
Sample B Female 65.8
Sample C Male 69.2
Sample D Male 61.8
Midbrain
nTPM: 68.8
Samples: 4

Max nTPM: 94.3
Min nTPM: 57.6
Sample A Female 94.3
Sample B Female 57.9
Sample C Male 65.4
Sample D Male 57.6
Periaqueductal gray
nTPM: 54.9
Samples: 3

Max nTPM: 59.8
Min nTPM: 48.7
Sample B Female 56.3
Sample C Male 59.8
Sample D Male 48.7
Superior colliculi
nTPM: 66.6
Samples: 4

Max nTPM: 77.3
Min nTPM: 57.0
Sample A Female 70.3
Sample B Female 77.3
Sample C Male 61.6
Sample D Male 57.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 115.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.8
Samples: 4

Max nTPM: 117.6
Min nTPM: 114.4
Sample A Male 117.6
Sample B Male 116.1
Sample C Female 114.4
Sample D Female 114.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
79539640 Antisense, RP_071018_01_B11, Mouse strain C57BL/6J (56 days, male) 2.8

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