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NDUFB4
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • NDUFB4
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:185.7 nTPM
FANTOM5:191.0 Scaled Tags Per Million
Pig:168.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051739
Glial cells High
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 185.7
Samples: 300

Max nTPM: 386.9
Min nTPM: 107.0
Std nTPM: 42.7
Median nTPM: 180.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 386.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 359.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 354.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 353.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 345.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 334.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 334.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 280.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 275.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 274.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 273.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 272.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 267.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 265.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 263.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 261.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 259.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 251.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 251.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 249.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 248.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 248.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 245.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 242.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 239.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 238.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 238.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 238.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 238.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 237.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 236.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 236.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 236.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 235.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 235.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 233.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 232.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 229.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 228.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 227.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 227.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 226.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 224.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 223.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 223.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 222.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 222.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 221.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 219.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 218.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 218.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 216.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 216.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 215.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 214.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 213.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 213.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 212.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 211.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 210.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 210.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 209.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 208.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 208.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 208.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 207.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 207.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 206.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 206.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 204.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 204.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 204.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 204.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 203.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 202.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 202.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 201.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 200.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 200.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 199.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 199.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 199.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 199.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 198.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 198.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 198.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 197.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 197.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 197.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 197.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 197.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 196.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 196.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 195.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 194.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 194.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 194.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 194.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 193.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 193.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 193.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 193.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 193.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 192.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 192.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 192.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 192.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 192.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 191.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 191.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 190.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 190.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 190.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 189.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 189.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 189.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 188.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 188.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 188.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 187.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 187.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 187.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 186.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 186.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 185.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 185.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 185.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 185.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 185.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 185.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 184.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 184.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 184.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 184.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 183.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 183.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 183.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 183.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 182.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 182.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 182.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 182.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 182.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 181.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 181.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 181.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 180.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 180.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 180.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 180.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 180.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 179.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 178.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 178.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 178.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 178.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 177.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 177.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 177.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 177.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 176.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 175.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 175.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 174.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 174.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 174.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 174.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 173.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 173.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 173.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 172.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 172.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 172.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 171.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 171.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 171.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 171.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 171.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 170.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 170.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 170.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 170.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 170.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 170.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 169.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 168.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 168.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 168.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 167.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 167.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 167.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 166.7
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 166.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 166.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 165.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 165.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 165.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 165.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 164.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 164.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 164.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 164.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 164.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 163.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 163.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 163.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 163.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 163.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 163.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 163.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 162.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 162.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 162.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 162.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 162.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 162.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 161.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 161.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 161.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 161.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 160.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 159.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 159.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 159.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 159.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 158.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 158.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 158.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 158.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 158.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 158.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 157.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 157.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 157.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 156.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 155.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 155.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 155.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 155.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 155.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 154.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 154.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 154.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 154.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 153.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 153.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 153.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 153.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 152.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 152.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 152.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 151.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 151.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 151.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 150.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 149.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 149.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 148.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 148.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 146.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 145.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 145.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 145.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 145.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 144.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 144.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 143.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 143.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 142.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 141.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 140.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 140.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 139.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 139.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 139.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 137.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 137.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 135.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 135.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 134.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 134.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 131.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 131.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 130.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 129.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 127.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 127.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 126.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 126.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 125.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 125.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 124.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 121.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 117.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 117.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 116.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 113.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 113.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 109.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 107.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

191.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 191.0
FF:10164-103B2 76 years, female 191.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

168.3
Pig sample Sample description nTPM
Caudate
nTPM: 168.4
Samples: 4

Max nTPM: 195.2
Min nTPM: 150.2
Sample A Female 150.2
Sample B Female 177.2
Sample C Male 195.2
Sample D Male 150.8

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