HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:21.8 nTPM
HPA Brain:31.0 nTPM
GTEx:21.8 nTPM
FANTOM5:44.1 Scaled Tags Per Million
Pig:22.9 nTPM
Mouse:48.3 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA078841
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 31.0
Sample id Sample description nTPM
Hippocampus
nTPM: 28.7
2529 Female, age 94, left hemisphere 36.6
1911 Female, age 85, right hemisphere 29.6
1898 Male, age 80, left hemisphere 29.0
1855 Male, age 76, left hemisphere 28.0
2148 Female, age 91, left hemisphere 25.8
2621 Female, age 67, right hemisphere 23.5
Dentate gyrus
nTPM: 25.1
2528 Male, age 74, both hemispheres 28.5
2530 Female, age 94, left hemisphere 28.4
2246 Female, age 85, both hemispheres 26.5
2010 Male, age 76, both hemispheres 25.1
2531 Female, age 67, both hemispheres 21.6
1927 Female, age 91, both hemispheres 20.6
Entorhinal gyrus
nTPM: 28.8
2117 Female, age 91, right hemisphere 39.1
1938 Female, age 85, left hemisphere 29.3
2686 Male, age 75, right hemisphere 28.3
1787 Male, age 76, left hemisphere 27.8
2764 Male, age 80, right hemisphere 27.0
2613 Female, age 94, left hemisphere 21.3
Hippocampus, CA1
nTPM: 24.8
2527 Male, age 74, both hemispheres 31.9
1873 Female, age 85, both hemispheres 25.5
2082 Female, age 91, right hemisphere 23.9
2749 Male, age 80, left hemisphere 21.6
2045 Male, age 76, both hemispheres 21.0
Hippocampus, CA2
nTPM: 27.4
2113 Female, age 91, right hemisphere 30.5
1963 Male, age 80, left hemisphere 29.3
2249 Male, age 74, both hemispheres 28.0
1940 Female, age 85, left hemisphere 27.3
2437 Female, age 94, left hemisphere 26.7
1892 Male, age 76, both hemispheres 22.6
Hippocampus, CA3
nTPM: 24.1
1891 Female, age 85, both hemispheres 32.1
2861 Female, age 67, both hemispheres 25.8
2436 Male, age 74, both hemispheres 25.3
1867 Male, age 76, both hemispheres 25.1
2137 Male, age 80, left hemisphere 19.0
2620 Female, age 94, left hemisphere 17.3
Parahippocampal cortex
nTPM: 26.7
2692 Male, age 74, both hemispheres 31.1
1933 Female, age 85, both hemispheres 29.3
1990 Female, age 91, right hemisphere 29.0
2250 Female, age 67, right hemisphere 28.6
2245 Female, age 91, both hemispheres 26.2
2018 Male, age 76, both hemispheres 26.0
2532 Female, age 72, left hemisphere 25.8
2622 Female, age 67, right hemisphere 25.2
1850 Male, age 80, both hemispheres 23.7
2693 Female, age 94, both hemispheres 22.3
Perirhinal gyrus
nTPM: 24.6
2848 Male, age 76, right hemisphere 27.2
1841 Female, age 85, right hemisphere 25.3
1847 Female, age 91, left hemisphere 24.7
2521 Female, age 94, right hemisphere 23.5
1794 Male, age 80, right hemisphere 22.4
Subiculum
nTPM: 31.0
2729 Female, age 91, right hemisphere 32.6
1977 Female, age 85, both hemispheres 31.2
1901 Male, age 80, both hemispheres 30.7
2438 Female, age 94, left hemisphere 30.5
2042 Male, age 76, both hemispheres 30.4
2619 Male, age 74, both hemispheres 30.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 21.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.8
Samples: 255

Max nTPM: 40.4
Min nTPM: 9.7
Std nTPM: 5.7
Median nTPM: 21.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 40.4
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 39.6
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 37.3
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 36.2
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 34.3
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 34.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 34.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 34.0
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 34.0
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 33.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 33.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 44.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.1
FF:10153-102I9 76 years, female 62.3
FF:10169-103B7 60 years, female 25.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 22.9
Pig sample Sample description nTPM
Subiculum
nTPM: 21.0
Samples: 4

Max nTPM: 23.9
Min nTPM: 19.1
Sample A Female 21.8
Sample B Female 19.1
Sample C Male 19.2
Sample D Male 23.9
Dorsal hippocampus
nTPM: 19.3
Samples: 4

Max nTPM: 25.0
Min nTPM: 14.2
Sample A Female 22.1
Sample B Female 15.9
Sample C Male 25.0
Sample D Male 14.2
Entorhinal cortex
nTPM: 23.0
Samples: 4

Max nTPM: 25.6
Min nTPM: 19.5
Sample A Female 22.3
Sample B Female 25.6
Sample C Male 24.5
Sample D Male 19.5
Ventral hippocampus
nTPM: 17.3
Samples: 4

Max nTPM: 18.1
Min nTPM: 15.7
Sample A Female 18.1
Sample B Female 15.7
Sample C Male 17.4
Sample D Male 17.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 48.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 48.3
Samples: 4

Max nTPM: 51.2
Min nTPM: 44.1
Sample A Male 49.0
Sample B Male 48.9
Sample C Female 44.1
Sample D Female 51.2
Hippocampal formation
nTPM: 41.1
Samples: 4

Max nTPM: 42.6
Min nTPM: 40.0
Sample A Male 42.6
Sample B Male 41.0
Sample C Female 40.9
Sample D Female 40.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
68148738 Antisense, RP_041116_02_A10, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo