MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.4 nTPM
HPA Brain:21.2 nTPM
GTEx:28.4 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:31.8 nTPM
Mouse:10.3 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 21.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.8
2666 Male, age 74, left hemisphere 21.4
2411 Female, age 72, unknown 19.9
2828 Female, age 72, unknown 19.6
2019 Male, age 18, unknown 19.1
1870 Female, age 42, unknown 18.6
1830 Male, age 51, unknown 17.9
1833 Male, age 53, unknown 17.1
2586 Male, age 75, left hemisphere 17.1
1827 Male, age 72, unknown 16.7
2219 Male, age 76, both hemispheres 10.2
Dorsal raphe nucleus
nTPM: 18.9
2750 Male, age 76, both hemispheres 22.1
1828 Male, age 53, unknown 18.7
2016 Female, age 72, unknown 18.6
2298 Female, age 72, unknown 18.4
2047 Male, age 72, unknown 16.6
Inferior colliculus
nTPM: 17.4
2097 Female, age 72, unknown 19.7
1890 Male, age 53, unknown 19.0
2849 Male, age 72, unknown 15.6
1848 Female, age 42, unknown 15.1
Median raphe nucleus
nTPM: 11.1
2220 Male, age 76, midline 11.1
Periaquaductal grey, anterior
nTPM: 21.2
2502 Female, age 75, unknown 26.3
1947 Male, age 18, unknown 19.1
1795 Male, age 51, unknown 18.2
Periaquaductal grey, dorsal
nTPM: 15.0
1831 Male, age 72, unknown 17.2
2464 Female, age 72, unknown 16.1
2850 Male, age 76, both hemispheres 13.5
1840 Male, age 53, unknown 13.3
Periaquaductal grey, lateral
nTPM: 16.2
2053 Male, age 18, unknown 18.8
2272 Male, age 74, both hemispheres 16.1
2140 Male, age 76, both hemispheres 13.7
Pretectal area
nTPM: 15.8
1817 Female, age 42, unknown 19.1
2316 Male, age 76, right hemisphere 18.9
2007 Male, age 72, unknown 18.2
1815 Male, age 53, unknown 17.7
1816 Male, age 51, unknown 16.3
2667 Female, age 75, unknown 16.0
2825 Male, age 18, unknown 15.1
1944 Female, age 72, unknown 14.9
2224 Female, age 72, unknown 13.6
2273 Male, age 74, both hemispheres 13.2
2407 Male, age 75, both hemispheres 11.0
Red nucleus
nTPM: 20.9
1821 Female, age 72, unknown 23.5
2588 Male, age 74, left hemisphere 22.8
2769 Male, age 72, unknown 22.3
1954 Female, age 42, unknown 22.1
2823 Male, age 76, right hemisphere 22.1
2227 Male, age 72, unknown 21.7
2503 Female, age 72, unknown 21.3
1904 Male, age 53, unknown 20.4
2725 Female, age 75, unknown 19.7
1865 Male, age 51, unknown 19.6
2785 Male, age 18, unknown 17.9
2584 Male, age 75, left hemisphere 17.1
Substantia nigra
nTPM: 16.2
2665 Male, age 74, both hemispheres 26.9
1851 Male, age 51, unknown 18.0
1889 Female, age 72, unknown 17.6
1916 Female, age 42, unknown 16.7
2409 Female, age 72, unknown 15.8
2583 Male, age 75, right hemisphere 14.3
2699 Male, age 18, unknown 14.1
2590 Female, age 75, unknown 13.6
2241 Male, age 72, unknown 12.5
1941 Male, age 53, unknown 12.4
Superior colliculus
nTPM: 16.7
2261 Male, age 18, unknown 19.2
2587 Male, age 74, left hemisphere 18.8
1995 Male, age 72, unknown 18.1
2087 Female, age 72, unknown 18.1
1796 Male, age 53, unknown 17.4
1839 Male, age 51, unknown 17.3
1913 Female, age 42, unknown 15.6
2668 Female, age 75, unknown 15.6
1895 Male, age 76, right hemisphere 14.2
2664 Male, age 75, both hemispheres 12.2
Ventral tegmental area
nTPM: 19.0
2021 Male, age 53, unknown 21.4
2218 Male, age 76, both hemispheres 19.2
2223 Female, age 72, unknown 19.1
2410 Female, age 72, unknown 19.0
1942 Male, age 51, unknown 18.2
1915 Female, age 42, unknown 17.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.4
Samples: 183

Max nTPM: 139.9
Min nTPM: 5.6
Std nTPM: 20.3
Median nTPM: 21.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 139.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 131.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 120.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 109.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 82.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 81.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 80.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 68.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 64.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 59.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 59.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.8
FF:10158-103A5 76 years, female 27.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.6
Samples: 4

Max nTPM: 35.7
Min nTPM: 19.5
Sample A Female 35.7
Sample B Female 25.9
Sample C Male 33.4
Sample D Male 19.5
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 34.6
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 24.5
Sample C Male 34.6
Sample D Male 29.2
Periaqueductal gray
nTPM: 23.8
Samples: 3

Max nTPM: 27.7
Min nTPM: 20.9
Sample B Female 22.7
Sample C Male 27.7
Sample D Male 20.9
Superior colliculi
nTPM: 31.8
Samples: 4

Max nTPM: 37.5
Min nTPM: 24.3
Sample A Female 37.5
Sample B Female 24.3
Sample C Male 33.2
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 12.8
Min nTPM: 7.6
Sample A Male 11.7
Sample B Male 12.8
Sample C Female 9.2
Sample D Female 7.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69735186 Antisense, RP_050503_02_C04, Mouse strain C57BL/6J (56 days, male) 0.0

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