MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.6 nTPM
HPA Brain:105.7 nTPM
GTEx:19.6 nTPM
FANTOM5:1.9 Scaled Tags Per Million
Pig:83.3 nTPM
Mouse:81.5 nTPM
Allen mouse:6.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 105.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.9
2219 Male, age 76, both hemispheres 62.5
1827 Male, age 72, unknown 45.9
2411 Female, age 72, unknown 44.4
2666 Male, age 74, left hemisphere 44.1
2828 Female, age 72, unknown 41.6
1833 Male, age 53, unknown 36.2
2019 Male, age 18, unknown 33.6
1870 Female, age 42, unknown 32.8
1830 Male, age 51, unknown 31.8
2586 Male, age 75, left hemisphere 26.4
Dorsal raphe nucleus
nTPM: 65.5
2298 Female, age 72, unknown 83.5
2047 Male, age 72, unknown 77.9
2750 Male, age 76, both hemispheres 75.1
1828 Male, age 53, unknown 57.1
2016 Female, age 72, unknown 33.8
Inferior colliculus
nTPM: 32.1
2097 Female, age 72, unknown 34.7
1848 Female, age 42, unknown 34.5
2849 Male, age 72, unknown 30.1
1890 Male, age 53, unknown 29.1
Median raphe nucleus
nTPM: 105.7
2220 Male, age 76, midline 105.7
Periaquaductal grey, anterior
nTPM: 63.2
2502 Female, age 75, unknown 66.0
1947 Male, age 18, unknown 62.0
1795 Male, age 51, unknown 61.7
Periaquaductal grey, dorsal
nTPM: 39.3
2850 Male, age 76, both hemispheres 51.3
1840 Male, age 53, unknown 42.8
1831 Male, age 72, unknown 32.4
2464 Female, age 72, unknown 30.7
Periaquaductal grey, lateral
nTPM: 44.1
2272 Male, age 74, both hemispheres 60.1
2140 Male, age 76, both hemispheres 37.3
2053 Male, age 18, unknown 34.9
Pretectal area
nTPM: 44.7
2273 Male, age 74, both hemispheres 58.8
1816 Male, age 51, unknown 52.5
1944 Female, age 72, unknown 52.0
2224 Female, age 72, unknown 51.2
2667 Female, age 75, unknown 50.0
2007 Male, age 72, unknown 47.4
1817 Female, age 42, unknown 42.8
2825 Male, age 18, unknown 42.6
1815 Male, age 53, unknown 41.0
2316 Male, age 76, right hemisphere 27.8
2407 Male, age 75, both hemispheres 25.4
Red nucleus
nTPM: 26.4
1821 Female, age 72, unknown 33.8
2785 Male, age 18, unknown 30.6
1954 Female, age 42, unknown 30.1
2584 Male, age 75, left hemisphere 29.7
2227 Male, age 72, unknown 27.4
2769 Male, age 72, unknown 26.9
1904 Male, age 53, unknown 26.3
1865 Male, age 51, unknown 25.7
2823 Male, age 76, right hemisphere 23.1
2503 Female, age 72, unknown 22.5
2725 Female, age 75, unknown 20.2
2588 Male, age 74, left hemisphere 20.0
Substantia nigra
nTPM: 67.2
1916 Female, age 42, unknown 119.3
1851 Male, age 51, unknown 84.5
2241 Male, age 72, unknown 82.3
1941 Male, age 53, unknown 79.2
2665 Male, age 74, both hemispheres 70.1
2409 Female, age 72, unknown 63.8
2699 Male, age 18, unknown 60.3
1889 Female, age 72, unknown 50.2
2583 Male, age 75, right hemisphere 33.6
2590 Female, age 75, unknown 28.1
Superior colliculus
nTPM: 40.1
2668 Female, age 75, unknown 86.4
2261 Male, age 18, unknown 47.7
1796 Male, age 53, unknown 47.0
2087 Female, age 72, unknown 44.3
1895 Male, age 76, right hemisphere 40.2
1839 Male, age 51, unknown 33.1
2587 Male, age 74, left hemisphere 33.0
2664 Male, age 75, both hemispheres 27.8
1913 Female, age 42, unknown 22.0
1995 Male, age 72, unknown 19.9
Ventral tegmental area
nTPM: 64.3
2218 Male, age 76, both hemispheres 89.8
2410 Female, age 72, unknown 86.3
1915 Female, age 42, unknown 71.7
1942 Male, age 51, unknown 52.6
2021 Male, age 53, unknown 45.8
2223 Female, age 72, unknown 39.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.6
Samples: 183

Max nTPM: 91.5
Min nTPM: 0.8
Std nTPM: 18.9
Median nTPM: 12.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 91.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 87.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 86.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 83.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 79.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 78.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 59.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 57.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 54.1
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 53.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.9
FF:10158-103A5 76 years, female 1.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 83.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.3
Samples: 4

Max nTPM: 134.5
Min nTPM: 17.2
Sample A Female 126.2
Sample B Female 55.2
Sample C Male 134.5
Sample D Male 17.2
Midbrain
nTPM: 47.1
Samples: 4

Max nTPM: 69.6
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 51.8
Sample C Male 69.6
Sample D Male 52.2
Periaqueductal gray
nTPM: 40.2
Samples: 3

Max nTPM: 57.4
Min nTPM: 30.5
Sample B Female 32.6
Sample C Male 57.4
Sample D Male 30.5
Superior colliculi
nTPM: 42.7
Samples: 4

Max nTPM: 57.1
Min nTPM: 17.7
Sample A Female 52.8
Sample B Female 17.7
Sample C Male 57.1
Sample D Male 43.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 81.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.4
Samples: 4

Max nTPM: 85.0
Min nTPM: 73.3
Sample A Male 73.3
Sample B Male 82.4
Sample C Female 85.0
Sample D Female 85.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
74821680 Antisense, RP_060321_02_B12, Mouse strain C57BL/6J (56 days, male) 6.0

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