MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:117.1 nTPM
HPA Brain:96.8 nTPM
GTEx:117.1 nTPM
FANTOM5:109.7 Scaled Tags Per Million
Pig:168.8 nTPM
Mouse:285.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 96.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.0
2019 Male, age 18, unknown 78.1
1827 Male, age 72, unknown 77.0
2828 Female, age 72, unknown 76.4
1870 Female, age 42, unknown 73.9
1833 Male, age 53, unknown 68.5
2666 Male, age 74, left hemisphere 67.5
1830 Male, age 51, unknown 62.4
2411 Female, age 72, unknown 62.3
2586 Male, age 75, left hemisphere 53.7
2219 Male, age 76, both hemispheres 50.1
Dorsal raphe nucleus
nTPM: 96.8
2298 Female, age 72, unknown 124.1
2016 Female, age 72, unknown 99.2
1828 Male, age 53, unknown 97.1
2047 Male, age 72, unknown 88.2
2750 Male, age 76, both hemispheres 75.6
Inferior colliculus
nTPM: 79.2
2097 Female, age 72, unknown 97.5
1890 Male, age 53, unknown 78.1
1848 Female, age 42, unknown 73.0
2849 Male, age 72, unknown 68.1
Median raphe nucleus
nTPM: 79.2
2220 Male, age 76, midline 79.2
Periaquaductal grey, anterior
nTPM: 83.5
1947 Male, age 18, unknown 92.2
1795 Male, age 51, unknown 79.7
2502 Female, age 75, unknown 78.4
Periaquaductal grey, dorsal
nTPM: 91.2
2850 Male, age 76, both hemispheres 124.2
1840 Male, age 53, unknown 87.6
1831 Male, age 72, unknown 79.1
2464 Female, age 72, unknown 74.1
Periaquaductal grey, lateral
nTPM: 90.3
2140 Male, age 76, both hemispheres 103.7
2272 Male, age 74, both hemispheres 93.6
2053 Male, age 18, unknown 73.6
Pretectal area
nTPM: 84.8
2273 Male, age 74, both hemispheres 112.1
2224 Female, age 72, unknown 102.1
2667 Female, age 75, unknown 95.8
1817 Female, age 42, unknown 91.7
1816 Male, age 51, unknown 90.4
1815 Male, age 53, unknown 82.1
1944 Female, age 72, unknown 78.0
2316 Male, age 76, right hemisphere 77.2
2007 Male, age 72, unknown 76.4
2825 Male, age 18, unknown 72.7
2407 Male, age 75, both hemispheres 54.5
Red nucleus
nTPM: 68.1
1821 Female, age 72, unknown 89.0
2725 Female, age 75, unknown 79.6
2823 Male, age 76, right hemisphere 78.5
1954 Female, age 42, unknown 74.4
2503 Female, age 72, unknown 70.5
1904 Male, age 53, unknown 68.6
2785 Male, age 18, unknown 68.0
2227 Male, age 72, unknown 65.7
2769 Male, age 72, unknown 64.8
1865 Male, age 51, unknown 64.2
2584 Male, age 75, left hemisphere 47.1
2588 Male, age 74, left hemisphere 46.7
Substantia nigra
nTPM: 86.1
2241 Male, age 72, unknown 104.6
1916 Female, age 42, unknown 101.5
2665 Male, age 74, both hemispheres 94.4
1851 Male, age 51, unknown 93.1
2699 Male, age 18, unknown 92.0
1889 Female, age 72, unknown 84.4
1941 Male, age 53, unknown 84.0
2409 Female, age 72, unknown 80.4
2590 Female, age 75, unknown 71.2
2583 Male, age 75, right hemisphere 55.2
Superior colliculus
nTPM: 73.3
2587 Male, age 74, left hemisphere 85.1
1995 Male, age 72, unknown 82.7
2087 Female, age 72, unknown 80.3
1796 Male, age 53, unknown 75.6
1839 Male, age 51, unknown 73.6
1913 Female, age 42, unknown 73.0
2261 Male, age 18, unknown 70.6
2668 Female, age 75, unknown 67.6
1895 Male, age 76, right hemisphere 65.1
2664 Male, age 75, both hemispheres 59.2
Ventral tegmental area
nTPM: 80.0
1915 Female, age 42, unknown 88.5
2218 Male, age 76, both hemispheres 84.8
2410 Female, age 72, unknown 79.7
1942 Male, age 51, unknown 77.0
2021 Male, age 53, unknown 75.4
2223 Female, age 72, unknown 74.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 117.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 117.1
Samples: 183

Max nTPM: 264.9
Min nTPM: 32.9
Std nTPM: 38.9
Median nTPM: 108.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 264.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 261.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 260.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 238.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 233.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 223.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 206.2
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 201.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 197.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 193.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 193.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 109.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.7
FF:10158-103A5 76 years, female 109.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 168.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 163.5
Samples: 4

Max nTPM: 194.2
Min nTPM: 117.8
Sample A Female 194.2
Sample B Female 180.3
Sample C Male 161.7
Sample D Male 117.8
Midbrain
nTPM: 137.7
Samples: 4

Max nTPM: 152.1
Min nTPM: 120.7
Sample A Female 152.1
Sample B Female 146.0
Sample C Male 120.7
Sample D Male 131.8
Periaqueductal gray
nTPM: 142.2
Samples: 3

Max nTPM: 163.1
Min nTPM: 121.5
Sample B Female 121.5
Sample C Male 163.1
Sample D Male 142.0
Superior colliculi
nTPM: 168.9
Samples: 4

Max nTPM: 241.2
Min nTPM: 121.4
Sample A Female 190.8
Sample B Female 241.2
Sample C Male 122.0
Sample D Male 121.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 285.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 285.1
Samples: 4

Max nTPM: 303.1
Min nTPM: 270.3
Sample A Male 303.1
Sample B Male 276.7
Sample C Female 270.3
Sample D Female 290.1

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