MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.5 nTPM
HPA Brain:17.0 nTPM
GTEx:0.5 nTPM
FANTOM5:0.5 Scaled Tags Per Million
Mouse:0.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.2
1870 Female, age 42, unknown 9.2
2411 Female, age 72, unknown 8.6
2219 Male, age 76, both hemispheres 7.6
2586 Male, age 75, left hemisphere 7.5
1827 Male, age 72, unknown 7.1
1833 Male, age 53, unknown 5.2
2828 Female, age 72, unknown 5.2
1830 Male, age 51, unknown 4.7
2666 Male, age 74, left hemisphere 4.1
2019 Male, age 18, unknown 3.0
Dorsal raphe nucleus
nTPM: 11.2
2047 Male, age 72, unknown 18.7
2298 Female, age 72, unknown 14.4
2750 Male, age 76, both hemispheres 9.7
2016 Female, age 72, unknown 7.4
1828 Male, age 53, unknown 5.9
Inferior colliculus
nTPM: 10.9
2097 Female, age 72, unknown 20.9
1890 Male, age 53, unknown 9.2
2849 Male, age 72, unknown 8.4
1848 Female, age 42, unknown 5.3
Median raphe nucleus
nTPM: 17.0
2220 Male, age 76, midline 17.0
Periaquaductal grey, anterior
nTPM: 6.6
1795 Male, age 51, unknown 8.6
2502 Female, age 75, unknown 8.6
1947 Male, age 18, unknown 2.5
Periaquaductal grey, dorsal
nTPM: 14.9
1831 Male, age 72, unknown 21.1
1840 Male, age 53, unknown 17.1
2850 Male, age 76, both hemispheres 12.2
2464 Female, age 72, unknown 9.1
Periaquaductal grey, lateral
nTPM: 10.7
2140 Male, age 76, both hemispheres 13.4
2053 Male, age 18, unknown 11.4
2272 Male, age 74, both hemispheres 7.3
Pretectal area
nTPM: 5.8
2224 Female, age 72, unknown 19.8
2825 Male, age 18, unknown 13.0
2316 Male, age 76, right hemisphere 5.4
2407 Male, age 75, both hemispheres 5.2
2273 Male, age 74, both hemispheres 4.8
1816 Male, age 51, unknown 4.1
2667 Female, age 75, unknown 3.9
1815 Male, age 53, unknown 2.7
1944 Female, age 72, unknown 2.6
2007 Male, age 72, unknown 1.5
1817 Female, age 42, unknown 1.4
Red nucleus
nTPM: 2.7
2584 Male, age 75, left hemisphere 7.1
2725 Female, age 75, unknown 3.4
2588 Male, age 74, left hemisphere 3.3
2227 Male, age 72, unknown 2.9
2823 Male, age 76, right hemisphere 2.8
2769 Male, age 72, unknown 2.4
2503 Female, age 72, unknown 2.0
1954 Female, age 42, unknown 1.9
1904 Male, age 53, unknown 1.8
2785 Male, age 18, unknown 1.7
1865 Male, age 51, unknown 1.5
1821 Female, age 72, unknown 1.2
Substantia nigra
nTPM: 7.5
1941 Male, age 53, unknown 16.6
2241 Male, age 72, unknown 9.7
1916 Female, age 42, unknown 8.6
2699 Male, age 18, unknown 8.2
2409 Female, age 72, unknown 7.7
2665 Male, age 74, both hemispheres 7.3
1851 Male, age 51, unknown 5.7
2590 Female, age 75, unknown 5.0
2583 Male, age 75, right hemisphere 3.2
1889 Female, age 72, unknown 2.9
Superior colliculus
nTPM: 5.1
2664 Male, age 75, both hemispheres 7.1
2261 Male, age 18, unknown 6.8
1796 Male, age 53, unknown 6.5
1839 Male, age 51, unknown 6.5
2587 Male, age 74, left hemisphere 6.1
2087 Female, age 72, unknown 4.8
1895 Male, age 76, right hemisphere 4.0
2668 Female, age 75, unknown 3.8
1913 Female, age 42, unknown 3.5
1995 Male, age 72, unknown 2.2
Ventral tegmental area
nTPM: 14.4
2223 Female, age 72, unknown 18.5
2218 Male, age 76, both hemispheres 18.4
1942 Male, age 51, unknown 16.0
2021 Male, age 53, unknown 13.9
1915 Female, age 42, unknown 13.7
2410 Female, age 72, unknown 5.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 0.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.5
Samples: 139

Max nTPM: 3.5
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 0.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 3.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 3.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 2.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 2.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 2.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 1.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 1.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 1.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.7
Sample A Male 1.0
Sample B Male 1.1
Sample C Female 0.7
Sample D Female 0.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68342354 Antisense, RP_041214_01_C03, Mouse strain C57BL/6J (56 days, male) 0.7
69568782 Antisense, RP_050426_02_G08, Mouse strain C57BL/6J (56 days, male) 0.0

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