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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • CAMK2A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:92.9 nTPM
FANTOM5:266.0 Scaled Tags Per Million
Pig:321.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051783Antibody HPA051785Antibody HPA053973Antibody CAB004330
Glial cells Not detectedNot detectedNot detectedMedium
Neuronal cells HighMediumMediumHigh








CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 92.9
Samples: 300

Max nTPM: 318.3
Min nTPM: 1.0
Std nTPM: 51.2
Median nTPM: 92.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 318.3
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 288.9
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 232.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 218.5
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 215.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 212.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 192.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 190.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 187.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 186.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 185.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 185.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 184.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 183.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 182.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 181.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 179.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 176.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 175.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 174.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 170.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 168.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 168.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 165.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 163.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 161.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 159.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 157.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 153.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 152.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 151.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 151.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 151.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 150.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 147.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 145.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 144.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 143.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 142.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 142.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 142.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 141.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 141.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 141.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 141.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 140.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 140.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 139.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 139.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 139.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 138.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 134.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 134.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 134.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 133.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 133.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 133.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 132.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 132.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 131.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 131.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 131.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 130.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 130.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 130.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 129.6
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 128.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 128.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 128.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 128.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 128.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 127.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 127.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 127.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 127.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 127.1
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 126.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 126.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 124.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 124.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 123.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 123.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 121.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 120.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 120.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 120.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 119.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 119.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 119.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 119.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 118.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 117.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 117.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 117.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 117.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 116.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 115.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 115.3
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 115.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 114.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 113.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 112.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 111.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 111.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 110.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 110.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 110.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 110.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 110.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 110.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 109.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 109.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 108.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 108.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 108.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 107.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 107.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 107.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 107.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 107.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 106.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 106.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 106.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 106.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 106.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 105.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 105.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 104.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 104.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 104.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 104.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 102.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 101.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 100.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 99.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 99.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 98.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 97.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 97.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 97.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 96.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 96.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 95.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 95.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 95.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 94.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 94.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 93.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 93.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 92.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 92.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 92.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 91.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 91.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 91.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 90.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 90.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 90.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 89.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 89.5
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 89.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 89.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 89.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 88.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 88.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 86.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 85.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 85.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 84.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 84.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 84.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 84.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 83.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 83.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 83.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 82.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 81.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 81.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 80.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 80.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 80.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 80.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 79.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 79.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 79.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 79.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 78.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 78.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 78.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 77.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 77.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 76.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 76.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 75.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 75.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 74.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 74.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 72.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 72.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 70.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 69.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 69.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 69.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 68.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 68.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 68.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 68.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 66.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 66.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 62.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 60.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 59.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 58.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 58.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 58.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 58.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 57.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 55.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 55.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 54.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 53.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 53.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 52.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 52.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 52.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 52.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 52.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 49.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 49.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 49.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 48.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 48.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 46.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 46.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 45.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 45.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 45.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 44.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 44.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 43.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 43.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 43.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 42.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 42.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 42.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 41.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 41.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 40.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 40.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 39.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 39.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 38.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 37.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 37.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 37.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 36.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 36.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 35.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 34.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 33.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 33.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 32.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 29.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 29.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 29.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 28.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 25.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 25.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 25.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 25.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 24.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 23.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 23.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 22.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 20.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 20.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 19.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 18.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 18.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 18.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 17.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 14.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 14.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 14.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 12.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 12.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 11.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 10.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 9.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 9.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 8.7
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 8.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 7.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 6.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 6.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 6.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 5.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 2.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 1.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

266.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 266.0
FF:10164-103B2 76 years, female 266.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

321.1
Pig sample Sample description nTPM
Caudate
nTPM: 321.1
Samples: 4

Max nTPM: 363.5
Min nTPM: 281.0
Sample A Female 284.6
Sample B Female 355.3
Sample C Male 363.5
Sample D Male 281.0

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