MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2484.1 nTPM
HPA Brain:500.1 nTPM
GTEx:2484.1 nTPM
FANTOM5:89.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 500.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 394.7
2666 Male, age 74, left hemisphere 468.4
1870 Female, age 42, unknown 451.9
2828 Female, age 72, unknown 420.4
1827 Male, age 72, unknown 419.1
2019 Male, age 18, unknown 395.7
2586 Male, age 75, left hemisphere 382.0
1833 Male, age 53, unknown 366.1
2219 Male, age 76, both hemispheres 358.4
2411 Female, age 72, unknown 356.1
1830 Male, age 51, unknown 328.6
Dorsal raphe nucleus
nTPM: 391.7
2298 Female, age 72, unknown 428.3
2016 Female, age 72, unknown 417.3
2750 Male, age 76, both hemispheres 406.0
1828 Male, age 53, unknown 360.4
2047 Male, age 72, unknown 346.3
Inferior colliculus
nTPM: 391.3
1890 Male, age 53, unknown 439.4
2097 Female, age 72, unknown 410.6
1848 Female, age 42, unknown 372.0
2849 Male, age 72, unknown 343.0
Median raphe nucleus
nTPM: 363.4
2220 Male, age 76, midline 363.4
Periaquaductal grey, anterior
nTPM: 396.2
2502 Female, age 75, unknown 414.6
1947 Male, age 18, unknown 400.1
1795 Male, age 51, unknown 373.9
Periaquaductal grey, dorsal
nTPM: 380.3
1840 Male, age 53, unknown 453.8
1831 Male, age 72, unknown 382.7
2464 Female, age 72, unknown 344.0
2850 Male, age 76, both hemispheres 340.7
Periaquaductal grey, lateral
nTPM: 334.9
2053 Male, age 18, unknown 376.7
2140 Male, age 76, both hemispheres 336.3
2272 Male, age 74, both hemispheres 291.7
Pretectal area
nTPM: 414.1
2007 Male, age 72, unknown 492.6
1816 Male, age 51, unknown 470.7
1817 Female, age 42, unknown 439.9
2667 Female, age 75, unknown 437.6
1944 Female, age 72, unknown 434.5
1815 Male, age 53, unknown 431.3
2316 Male, age 76, right hemisphere 408.1
2224 Female, age 72, unknown 387.5
2407 Male, age 75, both hemispheres 370.4
2825 Male, age 18, unknown 367.9
2273 Male, age 74, both hemispheres 314.7
Red nucleus
nTPM: 415.2
2503 Female, age 72, unknown 535.4
1821 Female, age 72, unknown 472.7
1865 Male, age 51, unknown 445.3
1904 Male, age 53, unknown 422.2
2227 Male, age 72, unknown 400.6
2785 Male, age 18, unknown 400.4
1954 Female, age 42, unknown 396.7
2588 Male, age 74, left hemisphere 396.7
2769 Male, age 72, unknown 395.4
2584 Male, age 75, left hemisphere 394.1
2725 Female, age 75, unknown 367.0
2823 Male, age 76, right hemisphere 355.7
Substantia nigra
nTPM: 500.1
1851 Male, age 51, unknown 673.1
2665 Male, age 74, both hemispheres 590.3
2409 Female, age 72, unknown 574.2
2699 Male, age 18, unknown 533.7
2241 Male, age 72, unknown 511.6
1916 Female, age 42, unknown 503.8
1889 Female, age 72, unknown 466.9
1941 Male, age 53, unknown 399.5
2590 Female, age 75, unknown 376.1
2583 Male, age 75, right hemisphere 371.4
Superior colliculus
nTPM: 419.5
2668 Female, age 75, unknown 548.2
2587 Male, age 74, left hemisphere 458.6
1913 Female, age 42, unknown 448.0
1796 Male, age 53, unknown 425.9
1995 Male, age 72, unknown 424.1
2087 Female, age 72, unknown 419.6
1895 Male, age 76, right hemisphere 386.2
2261 Male, age 18, unknown 382.7
1839 Male, age 51, unknown 354.5
2664 Male, age 75, both hemispheres 347.4
Ventral tegmental area
nTPM: 426.0
1915 Female, age 42, unknown 542.5
2223 Female, age 72, unknown 495.8
2021 Male, age 53, unknown 403.2
2410 Female, age 72, unknown 402.6
1942 Male, age 51, unknown 368.6
2218 Male, age 76, both hemispheres 343.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2484.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2484.1
Samples: 183

Max nTPM: 6635.1
Min nTPM: 994.3
Std nTPM: 888.0
Median nTPM: 2262.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6635.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 6505.6
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 5244.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 4728.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 4674.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4380.6
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 4290.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 4288.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 4278.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 4149.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4037.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 89.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.6
FF:10158-103A5 76 years, female 89.6

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