MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.6 nTPM
HPA Brain:44.3 nTPM
GTEx:45.6 nTPM
FANTOM5:37.5 Scaled Tags Per Million
Pig:26.1 nTPM
Mouse:13.3 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.0
2586 Male, age 75, left hemisphere 49.5
2411 Female, age 72, unknown 46.5
2828 Female, age 72, unknown 42.2
1870 Female, age 42, unknown 40.3
2019 Male, age 18, unknown 40.3
1830 Male, age 51, unknown 40.0
1833 Male, age 53, unknown 37.8
2219 Male, age 76, both hemispheres 37.6
1827 Male, age 72, unknown 34.7
2666 Male, age 74, left hemisphere 31.6
Dorsal raphe nucleus
nTPM: 36.1
2750 Male, age 76, both hemispheres 42.3
2298 Female, age 72, unknown 37.6
2016 Female, age 72, unknown 33.9
1828 Male, age 53, unknown 33.7
2047 Male, age 72, unknown 33.1
Inferior colliculus
nTPM: 30.5
1848 Female, age 42, unknown 31.9
2849 Male, age 72, unknown 31.9
1890 Male, age 53, unknown 29.1
2097 Female, age 72, unknown 29.1
Median raphe nucleus
nTPM: 40.8
2220 Male, age 76, midline 40.8
Periaquaductal grey, anterior
nTPM: 36.0
2502 Female, age 75, unknown 37.1
1947 Male, age 18, unknown 35.5
1795 Male, age 51, unknown 35.2
Periaquaductal grey, dorsal
nTPM: 28.2
2464 Female, age 72, unknown 30.9
1831 Male, age 72, unknown 29.5
2850 Male, age 76, both hemispheres 26.2
1840 Male, age 53, unknown 26.1
Periaquaductal grey, lateral
nTPM: 31.6
2272 Male, age 74, both hemispheres 35.1
2140 Male, age 76, both hemispheres 30.3
2053 Male, age 18, unknown 29.3
Pretectal area
nTPM: 34.8
1815 Male, age 53, unknown 41.3
1817 Female, age 42, unknown 40.5
2007 Male, age 72, unknown 39.6
2667 Female, age 75, unknown 38.0
1816 Male, age 51, unknown 37.1
1944 Female, age 72, unknown 34.8
2224 Female, age 72, unknown 32.4
2825 Male, age 18, unknown 31.4
2273 Male, age 74, both hemispheres 30.7
2407 Male, age 75, both hemispheres 30.5
2316 Male, age 76, right hemisphere 26.2
Red nucleus
nTPM: 44.3
2769 Male, age 72, unknown 50.5
2785 Male, age 18, unknown 49.8
2227 Male, age 72, unknown 47.6
2823 Male, age 76, right hemisphere 45.8
1904 Male, age 53, unknown 45.5
2588 Male, age 74, left hemisphere 45.4
2584 Male, age 75, left hemisphere 44.7
1821 Female, age 72, unknown 43.6
1865 Male, age 51, unknown 43.6
2503 Female, age 72, unknown 41.7
1954 Female, age 42, unknown 39.1
2725 Female, age 75, unknown 34.5
Substantia nigra
nTPM: 36.1
1851 Male, age 51, unknown 40.6
2590 Female, age 75, unknown 40.4
1916 Female, age 42, unknown 39.9
2665 Male, age 74, both hemispheres 39.4
2583 Male, age 75, right hemisphere 38.8
2699 Male, age 18, unknown 38.6
1941 Male, age 53, unknown 37.1
1889 Female, age 72, unknown 33.8
2409 Female, age 72, unknown 28.8
2241 Male, age 72, unknown 23.7
Superior colliculus
nTPM: 36.5
1913 Female, age 42, unknown 46.8
1995 Male, age 72, unknown 43.3
1796 Male, age 53, unknown 39.1
2664 Male, age 75, both hemispheres 37.2
2668 Female, age 75, unknown 35.9
2261 Male, age 18, unknown 34.9
2087 Female, age 72, unknown 33.6
1839 Male, age 51, unknown 33.5
1895 Male, age 76, right hemisphere 31.0
2587 Male, age 74, left hemisphere 30.0
Ventral tegmental area
nTPM: 37.7
2410 Female, age 72, unknown 50.1
2223 Female, age 72, unknown 38.7
1915 Female, age 42, unknown 36.6
2021 Male, age 53, unknown 34.0
1942 Male, age 51, unknown 33.7
2218 Male, age 76, both hemispheres 33.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.6
Samples: 183

Max nTPM: 100.7
Min nTPM: 19.8
Std nTPM: 12.4
Median nTPM: 44.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 100.7
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 82.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 79.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 78.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 77.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 75.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 75.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 72.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 72.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 71.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 71.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.5
FF:10158-103A5 76 years, female 37.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.1
Samples: 4

Max nTPM: 27.2
Min nTPM: 22.0
Sample A Female 27.2
Sample B Female 22.0
Sample C Male 23.9
Sample D Male 23.3
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 29.2
Min nTPM: 21.5
Sample A Female 29.2
Sample B Female 21.5
Sample C Male 28.8
Sample D Male 21.8
Periaqueductal gray
nTPM: 21.2
Samples: 3

Max nTPM: 22.2
Min nTPM: 19.3
Sample B Female 22.2
Sample C Male 22.0
Sample D Male 19.3
Superior colliculi
nTPM: 26.1
Samples: 4

Max nTPM: 29.0
Min nTPM: 24.3
Sample A Female 25.1
Sample B Female 29.0
Sample C Male 26.0
Sample D Male 24.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 13.7
Min nTPM: 12.5
Sample A Male 13.7
Sample B Male 13.2
Sample C Female 12.5
Sample D Female 13.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69201636 Antisense, RP_050324_03_A01, Mouse strain C57BL/6J (56 days, male) 1.1

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