HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:4.8 nTPM
HPA Brain:61.4 nTPM
GTEx:4.8 nTPM
FANTOM5:128.7 Scaled Tags Per Million
Pig:45.4 nTPM
Mouse:40.6 nTPM
Allen mouse:11.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006035
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 61.4
Sample id Sample description nTPM
Hippocampus
nTPM: 42.7
2621 Female, age 67, right hemisphere 50.5
2148 Female, age 91, left hemisphere 46.8
1911 Female, age 85, right hemisphere 45.2
1898 Male, age 80, left hemisphere 44.6
1855 Male, age 76, left hemisphere 35.7
2529 Female, age 94, left hemisphere 33.5
Dentate gyrus
nTPM: 45.8
2531 Female, age 67, both hemispheres 69.6
2246 Female, age 85, both hemispheres 56.8
1927 Female, age 91, both hemispheres 43.1
2010 Male, age 76, both hemispheres 40.4
2528 Male, age 74, both hemispheres 38.6
2530 Female, age 94, left hemisphere 26.5
Entorhinal gyrus
nTPM: 50.8
1938 Female, age 85, left hemisphere 63.6
2613 Female, age 94, left hemisphere 63.6
2764 Male, age 80, right hemisphere 57.6
2686 Male, age 75, right hemisphere 46.4
2117 Female, age 91, right hemisphere 38.2
1787 Male, age 76, left hemisphere 35.6
Hippocampus, CA1
nTPM: 55.0
2749 Male, age 80, left hemisphere 76.3
2045 Male, age 76, both hemispheres 54.1
2082 Female, age 91, right hemisphere 53.9
2527 Male, age 74, both hemispheres 48.4
1873 Female, age 85, both hemispheres 42.1
Hippocampus, CA2
nTPM: 40.0
1940 Female, age 85, left hemisphere 55.5
2249 Male, age 74, both hemispheres 46.1
2113 Female, age 91, right hemisphere 41.5
1963 Male, age 80, left hemisphere 40.8
2437 Female, age 94, left hemisphere 30.4
1892 Male, age 76, both hemispheres 26.0
Hippocampus, CA3
nTPM: 57.2
2137 Male, age 80, left hemisphere 83.2
2620 Female, age 94, left hemisphere 64.2
2861 Female, age 67, both hemispheres 63.5
2436 Male, age 74, both hemispheres 57.8
1891 Female, age 85, both hemispheres 37.6
1867 Male, age 76, both hemispheres 36.9
Parahippocampal cortex
nTPM: 54.8
2532 Female, age 72, left hemisphere 69.0
2622 Female, age 67, right hemisphere 68.0
1933 Female, age 85, both hemispheres 65.8
1850 Male, age 80, both hemispheres 60.4
2693 Female, age 94, both hemispheres 54.4
2245 Female, age 91, both hemispheres 52.8
1990 Female, age 91, right hemisphere 51.0
2250 Female, age 67, right hemisphere 44.8
2018 Male, age 76, both hemispheres 44.4
2692 Male, age 74, both hemispheres 37.2
Perirhinal gyrus
nTPM: 61.4
1841 Female, age 85, right hemisphere 78.0
1794 Male, age 80, right hemisphere 74.7
1847 Female, age 91, left hemisphere 66.0
2521 Female, age 94, right hemisphere 53.6
2848 Male, age 76, right hemisphere 34.7
Subiculum
nTPM: 43.9
1977 Female, age 85, both hemispheres 56.6
1901 Male, age 80, both hemispheres 52.3
2729 Female, age 91, right hemisphere 42.7
2042 Male, age 76, both hemispheres 38.6
2438 Female, age 94, left hemisphere 37.0
2619 Male, age 74, both hemispheres 36.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 4.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 4.8
Samples: 255

Max nTPM: 37.4
Min nTPM: 0.0
Std nTPM: 5.6
Median nTPM: 2.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 37.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 33.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 32.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 31.7
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 30.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 21.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 19.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 19.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 19.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 18.5
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 16.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 128.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 128.7
FF:10169-103B7 60 years, female 147.4
FF:10153-102I9 76 years, female 110.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 45.4
Pig sample Sample description nTPM
Subiculum
nTPM: 36.7
Samples: 4

Max nTPM: 47.0
Min nTPM: 30.7
Sample A Female 47.0
Sample B Female 31.3
Sample C Male 37.7
Sample D Male 30.7
Dorsal hippocampus
nTPM: 32.2
Samples: 4

Max nTPM: 37.3
Min nTPM: 27.1
Sample A Female 36.0
Sample B Female 37.3
Sample C Male 27.1
Sample D Male 28.3
Entorhinal cortex
nTPM: 45.5
Samples: 4

Max nTPM: 54.0
Min nTPM: 41.9
Sample A Female 54.0
Sample B Female 42.5
Sample C Male 43.4
Sample D Male 41.9
Ventral hippocampus
nTPM: 34.6
Samples: 4

Max nTPM: 42.4
Min nTPM: 26.7
Sample A Female 27.7
Sample B Female 26.7
Sample C Male 42.4
Sample D Male 41.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 40.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.2
Samples: 4

Max nTPM: 39.9
Min nTPM: 30.6
Sample A Male 30.6
Sample B Male 33.2
Sample C Female 33.1
Sample D Female 39.9
Hippocampal formation
nTPM: 40.6
Samples: 4

Max nTPM: 46.8
Min nTPM: 29.2
Sample A Male 29.2
Sample B Male 41.7
Sample C Female 46.8
Sample D Female 44.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 11.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.9
74514369 Antisense, RP_060208_02_D06, Mouse strain C57BL/6J (56 days, male) 11.9

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