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  • SUMMARY

  • TISSUE

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  • SUBCELL

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:61.8 nTPM
FANTOM5:142.5 Scaled Tags Per Million
Pig:135.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA019053Antibody HPA019061
Glial cells LowNot detected
Neuronal cells LowLow


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 61.8
Samples: 300

Max nTPM: 125.0
Min nTPM: 35.1
Std nTPM: 12.8
Median nTPM: 60.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 125.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 107.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 104.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 94.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 94.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 93.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 91.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 91.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 90.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 90.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 89.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 88.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 87.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 87.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 86.6
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 86.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 85.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 84.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 83.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 83.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 83.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 83.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 82.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 82.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 80.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 80.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 79.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 79.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 79.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 79.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 79.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 78.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 78.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 78.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 77.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 77.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 76.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 76.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 76.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 75.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 75.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 75.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 75.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 75.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 73.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 73.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 73.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 73.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 73.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 73.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 72.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 72.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 72.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 72.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 71.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 71.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 71.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 71.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 71.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 70.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 70.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 70.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 70.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 69.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 69.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 69.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 69.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 69.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 69.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 69.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 69.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 69.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 68.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 68.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 68.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 68.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 68.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 68.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 67.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 67.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 67.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 67.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 67.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 67.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 67.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 67.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 67.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 67.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 67.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 66.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 66.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 66.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 66.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 66.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 66.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 66.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 66.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 65.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 65.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 65.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 65.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 65.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 65.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 65.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 65.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 64.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 64.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 64.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 64.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 64.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 64.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 64.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 64.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 63.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 63.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 63.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 63.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 63.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 63.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 63.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 63.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 63.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 63.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 62.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 62.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 62.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 62.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 62.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 62.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 62.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 62.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 62.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 61.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 61.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 61.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 61.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 61.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 61.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 61.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 61.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 61.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 61.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 61.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 61.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 60.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 60.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 60.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 60.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 60.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 60.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 60.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 60.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 59.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 59.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 59.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 59.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 59.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 59.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 59.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 59.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 59.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 58.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 58.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 58.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 58.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 58.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 58.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 58.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 58.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 57.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 57.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 57.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 57.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 57.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 57.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 57.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 57.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 57.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 57.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 56.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 56.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 56.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 56.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 56.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 56.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 56.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 56.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 56.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 56.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 56.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 55.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 55.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 55.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 55.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 55.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 55.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 54.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 54.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 54.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 54.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 54.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 54.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 53.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 53.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 53.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 53.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 53.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 53.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 53.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 53.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 53.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 53.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 53.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 53.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 53.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 52.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 52.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 52.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 52.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 52.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 52.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 52.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 52.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 52.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 52.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 52.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 52.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 52.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 52.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 52.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 51.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 51.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 51.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 51.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 51.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 51.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 51.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 51.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 51.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 51.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 51.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 50.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 50.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 50.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 50.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 50.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 50.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 50.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 50.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 49.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 49.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 49.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 49.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 49.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 49.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 49.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 49.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 49.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 48.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 48.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 48.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 48.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 48.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 48.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 48.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 48.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 47.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 47.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 47.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 47.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 47.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 47.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 47.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 47.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 47.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 47.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 47.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 46.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 46.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 46.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 46.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 46.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 46.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 46.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 45.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 45.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 45.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 45.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 45.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 44.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 44.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 44.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 42.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 42.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 40.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 40.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 39.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 39.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 35.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 35.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

142.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 142.5
FF:10164-103B2 76 years, female 142.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.1
Pig sample Sample description nTPM
Caudate
nTPM: 135.1
Samples: 4

Max nTPM: 146.2
Min nTPM: 118.1
Sample A Female 142.3
Sample B Female 118.1
Sample C Male 146.2
Sample D Male 133.9

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