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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SRI
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:180.2 nTPM
FANTOM5:220.4 Scaled Tags Per Million
Pig:57.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA019004Antibody HPA073666
Glial cells MediumHigh
Neuronal cells LowHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 180.2
Samples: 300

Max nTPM: 351.9
Min nTPM: 74.3
Std nTPM: 44.3
Median nTPM: 173.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 351.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 331.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 307.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 303.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 301.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 297.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 286.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 286.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 285.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 285.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 281.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 273.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 269.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 265.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 264.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 263.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 263.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 262.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 261.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 254.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 253.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 251.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 250.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 249.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 249.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 248.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 245.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 244.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 243.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 243.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 241.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 240.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 239.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 235.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 235.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 234.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 233.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 228.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 227.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 227.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 226.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 226.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 225.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 225.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 224.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 224.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 224.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 222.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 221.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 220.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 220.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 217.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 217.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 216.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 216.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 216.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 214.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 214.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 214.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 213.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 212.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 212.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 211.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 211.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 209.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 209.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 208.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 208.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 208.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 206.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 205.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 204.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 204.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 203.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 203.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 203.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 203.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 202.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 202.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 199.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 199.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 199.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 199.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 198.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 198.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 198.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 197.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 197.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 197.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 197.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 196.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 195.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 195.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 194.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 194.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 194.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 194.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 193.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 193.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 192.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 191.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 191.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 190.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 189.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 189.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 188.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 188.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 188.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 188.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 186.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 186.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 186.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 186.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 186.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 185.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 185.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 184.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 184.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 184.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 184.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 184.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 183.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 183.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 182.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 182.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 182.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 182.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 182.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 181.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 181.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 181.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 180.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 179.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 178.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 177.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 176.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 176.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 175.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 175.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 175.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 174.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 174.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 174.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 174.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 174.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 173.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 173.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 173.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 173.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 173.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 173.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 172.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 172.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 172.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 172.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 171.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 171.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 171.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 170.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 170.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 169.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 169.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 168.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 168.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 168.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 167.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 167.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 166.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 166.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 166.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 166.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 166.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 165.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 165.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 165.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 165.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 164.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 164.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 164.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 164.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 164.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 164.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 164.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 164.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 164.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 163.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 163.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 163.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 163.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 163.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 163.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 162.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 162.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 162.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 162.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 160.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 160.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 160.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 159.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 159.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 158.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 158.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 158.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 157.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 157.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 156.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 156.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 156.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 155.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 155.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 155.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 155.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 155.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 155.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 154.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 154.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 154.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 153.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 153.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 152.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 152.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 152.3
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 152.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 151.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 151.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 151.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 150.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 149.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 149.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 149.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 148.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 148.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 147.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 147.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 147.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 146.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 146.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 146.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 146.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 145.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 145.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 145.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 145.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 143.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 143.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 143.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 142.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 142.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 142.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 142.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 141.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 140.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 139.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 139.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 138.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 137.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 137.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 137.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 137.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 136.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 136.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 136.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 135.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 135.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 135.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 132.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 132.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 132.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 130.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 128.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 128.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 128.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 128.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 128.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 127.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 127.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 126.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 124.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 123.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 122.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 122.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 121.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 119.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 119.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 119.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 118.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 118.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 116.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 116.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 115.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 115.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 109.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 106.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 105.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 104.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 101.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 95.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 86.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 79.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 74.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

220.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 220.4
FF:10164-103B2 76 years, female 220.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.6
Pig sample Sample description nTPM
Caudate
nTPM: 57.6
Samples: 4

Max nTPM: 63.0
Min nTPM: 52.1
Sample A Female 60.5
Sample B Female 54.6
Sample C Male 63.0
Sample D Male 52.1

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