MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:182.4 nTPM
HPA Brain:151.2 nTPM
GTEx:182.4 nTPM
FANTOM5:140.3 Scaled Tags Per Million
Pig:107.4 nTPM
Mouse:52.5 nTPM
Allen mouse:2.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 151.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 101.7
1827 Male, age 72, unknown 121.6
2411 Female, age 72, unknown 119.1
1870 Female, age 42, unknown 118.5
2828 Female, age 72, unknown 108.4
1833 Male, age 53, unknown 101.4
1830 Male, age 51, unknown 95.9
2019 Male, age 18, unknown 95.1
2586 Male, age 75, left hemisphere 92.1
2219 Male, age 76, both hemispheres 91.3
2666 Male, age 74, left hemisphere 73.5
Dorsal raphe nucleus
nTPM: 151.2
2298 Female, age 72, unknown 191.7
2016 Female, age 72, unknown 162.0
1828 Male, age 53, unknown 148.3
2047 Male, age 72, unknown 137.7
2750 Male, age 76, both hemispheres 116.2
Inferior colliculus
nTPM: 131.5
2097 Female, age 72, unknown 157.7
1848 Female, age 42, unknown 126.5
1890 Male, age 53, unknown 123.2
2849 Male, age 72, unknown 118.4
Median raphe nucleus
nTPM: 117.1
2220 Male, age 76, midline 117.1
Periaquaductal grey, anterior
nTPM: 109.8
1795 Male, age 51, unknown 116.2
1947 Male, age 18, unknown 111.0
2502 Female, age 75, unknown 102.2
Periaquaductal grey, dorsal
nTPM: 139.1
2850 Male, age 76, both hemispheres 161.5
1840 Male, age 53, unknown 158.7
2464 Female, age 72, unknown 119.4
1831 Male, age 72, unknown 116.7
Periaquaductal grey, lateral
nTPM: 140.3
2140 Male, age 76, both hemispheres 149.9
2272 Male, age 74, both hemispheres 145.2
2053 Male, age 18, unknown 125.7
Pretectal area
nTPM: 126.5
2273 Male, age 74, both hemispheres 168.0
2224 Female, age 72, unknown 160.2
1944 Female, age 72, unknown 134.0
2825 Male, age 18, unknown 131.0
2667 Female, age 75, unknown 128.7
1817 Female, age 42, unknown 125.9
1816 Male, age 51, unknown 121.7
1815 Male, age 53, unknown 116.7
2316 Male, age 76, right hemisphere 110.6
2007 Male, age 72, unknown 108.6
2407 Male, age 75, both hemispheres 86.5
Red nucleus
nTPM: 104.5
1821 Female, age 72, unknown 135.8
2503 Female, age 72, unknown 122.7
2725 Female, age 75, unknown 118.3
1954 Female, age 42, unknown 113.6
2227 Male, age 72, unknown 112.0
2769 Male, age 72, unknown 108.3
1865 Male, age 51, unknown 102.8
2823 Male, age 76, right hemisphere 100.7
1904 Male, age 53, unknown 98.6
2785 Male, age 18, unknown 86.3
2588 Male, age 74, left hemisphere 81.8
2584 Male, age 75, left hemisphere 73.3
Substantia nigra
nTPM: 128.8
2699 Male, age 18, unknown 155.2
1916 Female, age 42, unknown 149.0
1851 Male, age 51, unknown 140.9
2241 Male, age 72, unknown 137.9
2590 Female, age 75, unknown 127.1
1889 Female, age 72, unknown 125.8
1941 Male, age 53, unknown 123.2
2665 Male, age 74, both hemispheres 117.6
2583 Male, age 75, right hemisphere 106.8
2409 Female, age 72, unknown 104.4
Superior colliculus
nTPM: 112.5
2587 Male, age 74, left hemisphere 126.5
2261 Male, age 18, unknown 121.9
1995 Male, age 72, unknown 121.7
2087 Female, age 72, unknown 117.9
1796 Male, age 53, unknown 115.8
1913 Female, age 42, unknown 109.5
1895 Male, age 76, right hemisphere 108.5
1839 Male, age 51, unknown 106.5
2668 Female, age 75, unknown 102.0
2664 Male, age 75, both hemispheres 94.5
Ventral tegmental area
nTPM: 127.7
2410 Female, age 72, unknown 141.0
1915 Female, age 42, unknown 135.5
2021 Male, age 53, unknown 130.9
1942 Male, age 51, unknown 123.6
2223 Female, age 72, unknown 120.8
2218 Male, age 76, both hemispheres 114.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 182.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 182.4
Samples: 183

Max nTPM: 350.5
Min nTPM: 89.1
Std nTPM: 51.6
Median nTPM: 174.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 350.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 349.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 337.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 328.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 322.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 312.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 307.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 304.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 295.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 289.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 279.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 140.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 140.3
FF:10158-103A5 76 years, female 140.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 107.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 92.4
Samples: 4

Max nTPM: 121.2
Min nTPM: 77.9
Sample A Female 121.2
Sample B Female 80.6
Sample C Male 90.0
Sample D Male 77.9
Midbrain
nTPM: 107.4
Samples: 4

Max nTPM: 178.9
Min nTPM: 69.3
Sample A Female 178.9
Sample B Female 94.2
Sample C Male 87.1
Sample D Male 69.3
Periaqueductal gray
nTPM: 85.6
Samples: 3

Max nTPM: 91.5
Min nTPM: 81.0
Sample B Female 81.0
Sample C Male 91.5
Sample D Male 84.4
Superior colliculi
nTPM: 99.9
Samples: 4

Max nTPM: 133.4
Min nTPM: 75.8
Sample A Female 101.4
Sample B Female 133.4
Sample C Male 89.1
Sample D Male 75.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 52.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.6
Samples: 4

Max nTPM: 55.2
Min nTPM: 50.6
Sample A Male 51.4
Sample B Male 50.6
Sample C Female 55.2
Sample D Female 53.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
71991720 Antisense, RP_051012_03_C12, Mouse strain C57BL/6J (56 days, male) 4.6
70795910 Antisense, RP_050712_02_B12, Mouse strain C57BL/6J (56 days, male) 0.1

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