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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:11.7 nTPM
FANTOM5:96.4 Scaled Tags Per Million
Pig:86.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA034509Antibody HPA034510Antibody CAB009796
Glial cells LowNot detectedNot detected
Neuronal cells LowNot detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.7
Samples: 300

Max nTPM: 31.1
Min nTPM: 0.4
Std nTPM: 6.9
Median nTPM: 10.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 31.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 28.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 27.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 27.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 26.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 26.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 25.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 25.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 25.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 24.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 24.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 24.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 24.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 24.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 24.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 24.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 23.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 23.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 22.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 22.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 22.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 22.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 22.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 22.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 22.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 22.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 22.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 22.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 22.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 22.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 22.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 21.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 21.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 21.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 21.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 21.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 21.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 21.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 21.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 20.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 20.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 20.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 20.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 19.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 19.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 19.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 19.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 19.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 18.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 18.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 18.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 18.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 18.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 18.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 18.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 18.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 18.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 17.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 17.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 17.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 17.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 17.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 17.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 17.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 17.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 17.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 17.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 17.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 17.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 17.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 17.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 16.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 16.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 16.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 16.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 16.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 16.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 16.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 16.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 16.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 16.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 16.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 16.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 16.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 16.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 16.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 16.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 15.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 15.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 15.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 15.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 15.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 15.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 15.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 15.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 15.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 15.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 15.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 15.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 14.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 14.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 14.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 14.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 14.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 14.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 14.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 14.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 14.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 14.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 14.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 14.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 14.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 14.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 14.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 13.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 13.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 13.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 13.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 13.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 13.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 13.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 13.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 13.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 13.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 13.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 13.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 13.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 13.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 13.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 13.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 13.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 12.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 12.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 11.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 11.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 11.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 11.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 11.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 11.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 11.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 11.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 11.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 11.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 11.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 11.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 11.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 11.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 11.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 10.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 10.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 10.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 10.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 10.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 10.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 10.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 10.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 10.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 10.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 10.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 10.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 10.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 10.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 10.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 10.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 9.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 9.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 9.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 9.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 9.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 9.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 9.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 9.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 9.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 9.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 9.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 9.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 9.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 9.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 9.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 9.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 9.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 9.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 9.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 9.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 8.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 8.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 8.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 8.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 8.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 8.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 8.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 8.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 8.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 8.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 8.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 7.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 7.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 7.6
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 7.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 7.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 7.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 7.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 7.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 6.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 6.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 6.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 6.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 6.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 6.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 6.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 6.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 6.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 6.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 6.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 6.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 5.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 5.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 5.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 5.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 5.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 5.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 5.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 5.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 5.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 5.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 5.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 5.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 5.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 5.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 5.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 4.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 4.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 4.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 4.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 4.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 4.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 4.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 4.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 4.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 4.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 4.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 4.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 4.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 4.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 4.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 4.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 4.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 4.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 3.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 3.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 3.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 3.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 3.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 3.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 3.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 3.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 3.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 3.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 3.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 3.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 3.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 3.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 3.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 3.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 3.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 3.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 3.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 3.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 3.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 3.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 3.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 3.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 3.0
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 3.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2.4
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 2.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 2.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 2.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 2.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 2.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 2.0
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 2.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1.1
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 0.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 0.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

96.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 96.4
FF:10164-103B2 76 years, female 96.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.0
Pig sample Sample description nTPM
Caudate
nTPM: 86.0
Samples: 4

Max nTPM: 105.5
Min nTPM: 67.7
Sample A Female 67.7
Sample B Female 84.0
Sample C Male 105.5
Sample D Male 86.8

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