MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.1 nTPM
HPA Brain:48.8 nTPM
GTEx:32.1 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Pig:52.1 nTPM
Mouse:29.3 nTPM
Allen mouse:3.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 48.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
2828 Female, age 72, unknown 54.9
2666 Male, age 74, left hemisphere 54.4
2019 Male, age 18, unknown 41.2
1827 Male, age 72, unknown 40.5
2411 Female, age 72, unknown 37.6
1870 Female, age 42, unknown 37.1
1830 Male, age 51, unknown 35.2
1833 Male, age 53, unknown 33.6
2586 Male, age 75, left hemisphere 31.6
2219 Male, age 76, both hemispheres 27.3
Dorsal raphe nucleus
nTPM: 42.1
2047 Male, age 72, unknown 54.3
1828 Male, age 53, unknown 52.1
2750 Male, age 76, both hemispheres 46.8
2298 Female, age 72, unknown 29.5
2016 Female, age 72, unknown 27.8
Inferior colliculus
nTPM: 28.8
2097 Female, age 72, unknown 36.7
1890 Male, age 53, unknown 31.0
1848 Female, age 42, unknown 24.3
2849 Male, age 72, unknown 23.0
Median raphe nucleus
nTPM: 42.7
2220 Male, age 76, midline 42.7
Periaquaductal grey, anterior
nTPM: 38.0
1947 Male, age 18, unknown 50.0
1795 Male, age 51, unknown 38.5
2502 Female, age 75, unknown 25.5
Periaquaductal grey, dorsal
nTPM: 22.3
2464 Female, age 72, unknown 33.0
1831 Male, age 72, unknown 22.2
2850 Male, age 76, both hemispheres 19.2
1840 Male, age 53, unknown 14.9
Periaquaductal grey, lateral
nTPM: 25.9
2053 Male, age 18, unknown 33.9
2272 Male, age 74, both hemispheres 26.1
2140 Male, age 76, both hemispheres 17.7
Pretectal area
nTPM: 30.9
1817 Female, age 42, unknown 51.2
2007 Male, age 72, unknown 43.5
2316 Male, age 76, right hemisphere 40.5
1815 Male, age 53, unknown 36.3
1816 Male, age 51, unknown 30.6
2224 Female, age 72, unknown 27.5
2825 Male, age 18, unknown 27.5
1944 Female, age 72, unknown 25.3
2407 Male, age 75, both hemispheres 23.3
2667 Female, age 75, unknown 17.5
2273 Male, age 74, both hemispheres 17.0
Red nucleus
nTPM: 48.8
2823 Male, age 76, right hemisphere 64.6
1954 Female, age 42, unknown 57.8
2503 Female, age 72, unknown 57.0
1904 Male, age 53, unknown 53.1
1865 Male, age 51, unknown 50.2
1821 Female, age 72, unknown 48.8
2588 Male, age 74, left hemisphere 45.1
2227 Male, age 72, unknown 44.3
2785 Male, age 18, unknown 43.9
2769 Male, age 72, unknown 41.5
2725 Female, age 75, unknown 41.1
2584 Male, age 75, left hemisphere 38.5
Substantia nigra
nTPM: 24.4
1889 Female, age 72, unknown 33.4
2583 Male, age 75, right hemisphere 29.7
2409 Female, age 72, unknown 27.8
2665 Male, age 74, both hemispheres 27.3
2590 Female, age 75, unknown 26.8
1851 Male, age 51, unknown 25.5
1941 Male, age 53, unknown 23.3
2241 Male, age 72, unknown 19.9
1916 Female, age 42, unknown 18.0
2699 Male, age 18, unknown 12.5
Superior colliculus
nTPM: 36.9
2668 Female, age 75, unknown 84.3
1895 Male, age 76, right hemisphere 42.4
2261 Male, age 18, unknown 37.6
1796 Male, age 53, unknown 35.7
1913 Female, age 42, unknown 31.8
1839 Male, age 51, unknown 30.2
2587 Male, age 74, left hemisphere 30.2
1995 Male, age 72, unknown 29.1
2087 Female, age 72, unknown 26.1
2664 Male, age 75, both hemispheres 21.1
Ventral tegmental area
nTPM: 29.7
2410 Female, age 72, unknown 36.5
2223 Female, age 72, unknown 31.6
1915 Female, age 42, unknown 30.4
1942 Male, age 51, unknown 29.7
2218 Male, age 76, both hemispheres 25.6
2021 Male, age 53, unknown 24.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.1
Samples: 183

Max nTPM: 322.9
Min nTPM: 8.8
Std nTPM: 29.2
Median nTPM: 25.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 322.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 222.3
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 91.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 78.1
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 77.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 76.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 67.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 59.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 59.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 59.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 58.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.1
FF:10158-103A5 76 years, female 30.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.1
Samples: 4

Max nTPM: 56.1
Min nTPM: 40.7
Sample A Female 56.1
Sample B Female 56.0
Sample C Male 40.7
Sample D Male 55.5
Midbrain
nTPM: 38.5
Samples: 4

Max nTPM: 57.9
Min nTPM: 27.3
Sample A Female 27.3
Sample B Female 57.9
Sample C Male 40.3
Sample D Male 28.6
Periaqueductal gray
nTPM: 36.9
Samples: 3

Max nTPM: 50.9
Min nTPM: 28.0
Sample B Female 50.9
Sample C Male 31.7
Sample D Male 28.0
Superior colliculi
nTPM: 36.8
Samples: 4

Max nTPM: 47.2
Min nTPM: 20.8
Sample A Female 47.2
Sample B Female 20.8
Sample C Male 39.7
Sample D Male 39.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 29.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.3
Samples: 4

Max nTPM: 30.8
Min nTPM: 28.4
Sample A Male 29.3
Sample B Male 28.4
Sample C Female 28.8
Sample D Female 30.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
71836841 Antisense, RP_051017_02_C04, Mouse strain C57BL/6J (56 days, male) 4.8
68196927 Antisense, RP_041116_01_F06, Mouse strain C57BL/6J (56 days, male) 1.7

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