MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.7 nTPM
HPA Brain:37.9 nTPM
GTEx:10.7 nTPM
FANTOM5:61.9 Scaled Tags Per Million
Pig:29.8 nTPM
Mouse:4.4 nTPM
Allen mouse:11.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.8
1833 Male, age 53, unknown 42.0
1830 Male, age 51, unknown 40.6
2411 Female, age 72, unknown 38.2
2019 Male, age 18, unknown 36.8
1827 Male, age 72, unknown 34.3
2666 Male, age 74, left hemisphere 33.0
2828 Female, age 72, unknown 32.7
1870 Female, age 42, unknown 30.6
2219 Male, age 76, both hemispheres 25.2
2586 Male, age 75, left hemisphere 24.8
Dorsal raphe nucleus
nTPM: 23.7
2750 Male, age 76, both hemispheres 27.9
1828 Male, age 53, unknown 24.9
2016 Female, age 72, unknown 23.0
2298 Female, age 72, unknown 22.1
2047 Male, age 72, unknown 20.5
Inferior colliculus
nTPM: 29.7
1890 Male, age 53, unknown 34.4
2097 Female, age 72, unknown 31.7
1848 Female, age 42, unknown 27.0
2849 Male, age 72, unknown 25.7
Median raphe nucleus
nTPM: 24.6
2220 Male, age 76, midline 24.6
Periaquaductal grey, anterior
nTPM: 24.7
1947 Male, age 18, unknown 28.1
2502 Female, age 75, unknown 25.0
1795 Male, age 51, unknown 21.1
Periaquaductal grey, dorsal
nTPM: 24.6
2464 Female, age 72, unknown 32.7
1831 Male, age 72, unknown 26.6
1840 Male, age 53, unknown 19.7
2850 Male, age 76, both hemispheres 19.5
Periaquaductal grey, lateral
nTPM: 23.8
2272 Male, age 74, both hemispheres 25.9
2053 Male, age 18, unknown 25.2
2140 Male, age 76, both hemispheres 20.4
Pretectal area
nTPM: 29.8
2316 Male, age 76, right hemisphere 37.5
2407 Male, age 75, both hemispheres 36.5
1815 Male, age 53, unknown 33.3
2007 Male, age 72, unknown 32.0
1816 Male, age 51, unknown 28.7
1944 Female, age 72, unknown 28.0
2667 Female, age 75, unknown 28.0
1817 Female, age 42, unknown 26.9
2224 Female, age 72, unknown 26.8
2825 Male, age 18, unknown 25.3
2273 Male, age 74, both hemispheres 24.7
Red nucleus
nTPM: 37.9
1865 Male, age 51, unknown 44.9
1904 Male, age 53, unknown 44.2
2503 Female, age 72, unknown 42.6
2785 Male, age 18, unknown 41.0
2227 Male, age 72, unknown 40.8
2769 Male, age 72, unknown 39.1
1954 Female, age 42, unknown 38.5
1821 Female, age 72, unknown 34.7
2588 Male, age 74, left hemisphere 34.6
2584 Male, age 75, left hemisphere 33.7
2823 Male, age 76, right hemisphere 33.5
2725 Female, age 75, unknown 27.8
Substantia nigra
nTPM: 29.8
2590 Female, age 75, unknown 44.6
2583 Male, age 75, right hemisphere 33.5
2409 Female, age 72, unknown 32.9
2665 Male, age 74, both hemispheres 31.3
1889 Female, age 72, unknown 29.3
2241 Male, age 72, unknown 27.4
1851 Male, age 51, unknown 27.3
2699 Male, age 18, unknown 26.1
1941 Male, age 53, unknown 23.6
1916 Female, age 42, unknown 21.9
Superior colliculus
nTPM: 30.2
1913 Female, age 42, unknown 38.5
2087 Female, age 72, unknown 31.8
2587 Male, age 74, left hemisphere 31.4
1995 Male, age 72, unknown 30.4
2664 Male, age 75, both hemispheres 29.8
1895 Male, age 76, right hemisphere 29.5
1796 Male, age 53, unknown 28.2
1839 Male, age 51, unknown 27.6
2668 Female, age 75, unknown 27.5
2261 Male, age 18, unknown 26.9
Ventral tegmental area
nTPM: 26.5
2223 Female, age 72, unknown 33.6
2410 Female, age 72, unknown 30.5
2218 Male, age 76, both hemispheres 25.9
1942 Male, age 51, unknown 25.0
1915 Female, age 42, unknown 23.6
2021 Male, age 53, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.7
Samples: 183

Max nTPM: 32.6
Min nTPM: 4.0
Std nTPM: 4.2
Median nTPM: 10.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 29.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 24.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 23.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 22.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 20.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 20.0
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 18.7
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 18.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 18.5
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 17.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.9
FF:10158-103A5 76 years, female 61.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.9
Samples: 4

Max nTPM: 41.3
Min nTPM: 20.5
Sample A Female 20.5
Sample B Female 26.9
Sample C Male 26.7
Sample D Male 41.3
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 32.8
Min nTPM: 26.6
Sample A Female 32.8
Sample B Female 26.6
Sample C Male 29.1
Sample D Male 30.6
Periaqueductal gray
nTPM: 24.8
Samples: 3

Max nTPM: 25.7
Min nTPM: 23.2
Sample B Female 25.6
Sample C Male 23.2
Sample D Male 25.7
Superior colliculi
nTPM: 25.6
Samples: 4

Max nTPM: 32.3
Min nTPM: 19.2
Sample A Female 21.7
Sample B Female 19.2
Sample C Male 32.3
Sample D Male 29.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.0
Sample A Male 3.0
Sample B Male 4.4
Sample C Female 5.1
Sample D Female 5.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.8
70305634 Antisense, RP_050609_04_G01, Mouse strain C57BL/6J (56 days, male) 11.8

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