MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.4 nTPM
HPA Brain:102.8 nTPM
GTEx:23.4 nTPM
FANTOM5:57.2 Scaled Tags Per Million
Pig:41.2 nTPM
Mouse:79.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 102.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.5
2019 Male, age 18, unknown 105.6
2411 Female, age 72, unknown 101.5
1827 Male, age 72, unknown 100.9
2219 Male, age 76, both hemispheres 95.9
1830 Male, age 51, unknown 92.7
1870 Female, age 42, unknown 90.7
1833 Male, age 53, unknown 86.6
2828 Female, age 72, unknown 83.8
2666 Male, age 74, left hemisphere 82.6
2586 Male, age 75, left hemisphere 75.2
Dorsal raphe nucleus
nTPM: 93.6
2016 Female, age 72, unknown 101.9
2047 Male, age 72, unknown 100.5
1828 Male, age 53, unknown 89.9
2750 Male, age 76, both hemispheres 88.2
2298 Female, age 72, unknown 87.4
Inferior colliculus
nTPM: 102.8
2097 Female, age 72, unknown 110.8
1890 Male, age 53, unknown 104.2
1848 Female, age 42, unknown 102.0
2849 Male, age 72, unknown 94.3
Median raphe nucleus
nTPM: 88.9
2220 Male, age 76, midline 88.9
Periaquaductal grey, anterior
nTPM: 96.4
1947 Male, age 18, unknown 107.1
2502 Female, age 75, unknown 92.9
1795 Male, age 51, unknown 89.2
Periaquaductal grey, dorsal
nTPM: 95.8
1840 Male, age 53, unknown 101.9
1831 Male, age 72, unknown 99.9
2464 Female, age 72, unknown 94.2
2850 Male, age 76, both hemispheres 87.3
Periaquaductal grey, lateral
nTPM: 94.7
2053 Male, age 18, unknown 96.5
2272 Male, age 74, both hemispheres 95.6
2140 Male, age 76, both hemispheres 92.1
Pretectal area
nTPM: 98.9
1944 Female, age 72, unknown 110.5
1816 Male, age 51, unknown 107.7
2007 Male, age 72, unknown 107.5
2273 Male, age 74, both hemispheres 102.0
2407 Male, age 75, both hemispheres 101.4
1817 Female, age 42, unknown 96.9
1815 Male, age 53, unknown 96.2
2316 Male, age 76, right hemisphere 93.0
2825 Male, age 18, unknown 92.0
2224 Female, age 72, unknown 90.8
2667 Female, age 75, unknown 90.2
Red nucleus
nTPM: 91.0
1954 Female, age 42, unknown 97.1
1821 Female, age 72, unknown 96.0
2503 Female, age 72, unknown 95.9
2725 Female, age 75, unknown 95.4
2588 Male, age 74, left hemisphere 93.4
1865 Male, age 51, unknown 92.1
2823 Male, age 76, right hemisphere 90.6
2584 Male, age 75, left hemisphere 90.0
2785 Male, age 18, unknown 88.7
1904 Male, age 53, unknown 88.6
2769 Male, age 72, unknown 82.6
2227 Male, age 72, unknown 81.6
Substantia nigra
nTPM: 97.4
2409 Female, age 72, unknown 118.0
1941 Male, age 53, unknown 113.3
1889 Female, age 72, unknown 99.9
2590 Female, age 75, unknown 98.2
1916 Female, age 42, unknown 97.7
2241 Male, age 72, unknown 96.9
2583 Male, age 75, right hemisphere 93.9
1851 Male, age 51, unknown 93.2
2665 Male, age 74, both hemispheres 86.0
2699 Male, age 18, unknown 76.8
Superior colliculus
nTPM: 94.3
1895 Male, age 76, right hemisphere 107.7
2087 Female, age 72, unknown 102.3
2668 Female, age 75, unknown 99.8
2261 Male, age 18, unknown 98.8
2587 Male, age 74, left hemisphere 96.1
1995 Male, age 72, unknown 92.1
1913 Female, age 42, unknown 91.8
1839 Male, age 51, unknown 88.1
1796 Male, age 53, unknown 86.9
2664 Male, age 75, both hemispheres 79.3
Ventral tegmental area
nTPM: 88.6
2410 Female, age 72, unknown 94.4
1942 Male, age 51, unknown 93.9
1915 Female, age 42, unknown 88.7
2218 Male, age 76, both hemispheres 87.7
2021 Male, age 53, unknown 86.9
2223 Female, age 72, unknown 80.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.4
Samples: 183

Max nTPM: 50.8
Min nTPM: 13.6
Std nTPM: 5.1
Median nTPM: 22.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 43.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 41.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 39.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 37.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 36.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 35.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 33.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 33.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 33.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 31.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.2
FF:10158-103A5 76 years, female 57.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.7
Samples: 4

Max nTPM: 39.6
Min nTPM: 21.6
Sample A Female 39.6
Sample B Female 24.7
Sample C Male 32.8
Sample D Male 21.6
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 63.6
Min nTPM: 29.0
Sample A Female 29.0
Sample B Female 33.0
Sample C Male 63.6
Sample D Male 39.1
Periaqueductal gray
nTPM: 29.3
Samples: 3

Max nTPM: 33.1
Min nTPM: 27.3
Sample B Female 27.3
Sample C Male 33.1
Sample D Male 27.5
Superior colliculi
nTPM: 38.4
Samples: 4

Max nTPM: 51.2
Min nTPM: 27.6
Sample A Female 38.7
Sample B Female 27.6
Sample C Male 51.2
Sample D Male 36.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 79.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.7
Samples: 4

Max nTPM: 86.3
Min nTPM: 73.5
Sample A Male 73.5
Sample B Male 80.8
Sample C Female 86.3
Sample D Female 78.3

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