MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.8 nTPM
HPA Brain:71.3 nTPM
GTEx:13.8 nTPM
FANTOM5:49.9 Scaled Tags Per Million
Pig:47.8 nTPM
Mouse:40.3 nTPM
Allen mouse:3.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.2
2411 Female, age 72, unknown 94.9
2586 Male, age 75, left hemisphere 87.5
2666 Male, age 74, left hemisphere 69.2
2219 Male, age 76, both hemispheres 60.8
2828 Female, age 72, unknown 54.9
1870 Female, age 42, unknown 52.0
1827 Male, age 72, unknown 50.2
1833 Male, age 53, unknown 48.7
2019 Male, age 18, unknown 47.2
1830 Male, age 51, unknown 47.1
Dorsal raphe nucleus
nTPM: 65.2
2298 Female, age 72, unknown 86.3
2047 Male, age 72, unknown 71.0
1828 Male, age 53, unknown 62.5
2016 Female, age 72, unknown 54.9
2750 Male, age 76, both hemispheres 51.5
Inferior colliculus
nTPM: 53.1
2097 Female, age 72, unknown 57.9
2849 Male, age 72, unknown 57.1
1890 Male, age 53, unknown 51.2
1848 Female, age 42, unknown 46.3
Median raphe nucleus
nTPM: 60.3
2220 Male, age 76, midline 60.3
Periaquaductal grey, anterior
nTPM: 65.0
1795 Male, age 51, unknown 76.0
2502 Female, age 75, unknown 66.8
1947 Male, age 18, unknown 52.2
Periaquaductal grey, dorsal
nTPM: 71.3
2850 Male, age 76, both hemispheres 96.2
1840 Male, age 53, unknown 66.9
1831 Male, age 72, unknown 65.4
2464 Female, age 72, unknown 56.7
Periaquaductal grey, lateral
nTPM: 67.6
2140 Male, age 76, both hemispheres 81.0
2053 Male, age 18, unknown 68.8
2272 Male, age 74, both hemispheres 52.9
Pretectal area
nTPM: 59.3
1816 Male, age 51, unknown 91.7
1944 Female, age 72, unknown 70.0
2007 Male, age 72, unknown 60.6
1817 Female, age 42, unknown 60.0
2224 Female, age 72, unknown 59.6
2825 Male, age 18, unknown 58.3
2667 Female, age 75, unknown 54.3
2273 Male, age 74, both hemispheres 53.5
1815 Male, age 53, unknown 51.9
2316 Male, age 76, right hemisphere 46.9
2407 Male, age 75, both hemispheres 45.5
Red nucleus
nTPM: 54.0
2227 Male, age 72, unknown 61.0
2769 Male, age 72, unknown 60.9
2584 Male, age 75, left hemisphere 59.3
2725 Female, age 75, unknown 57.2
2588 Male, age 74, left hemisphere 56.0
1954 Female, age 42, unknown 54.6
1904 Male, age 53, unknown 53.8
2785 Male, age 18, unknown 52.1
2503 Female, age 72, unknown 51.7
1821 Female, age 72, unknown 49.7
1865 Male, age 51, unknown 46.7
2823 Male, age 76, right hemisphere 45.3
Substantia nigra
nTPM: 45.9
1941 Male, age 53, unknown 65.0
1889 Female, age 72, unknown 58.4
2583 Male, age 75, right hemisphere 51.3
2409 Female, age 72, unknown 43.7
1916 Female, age 42, unknown 43.6
2665 Male, age 74, both hemispheres 41.9
2590 Female, age 75, unknown 41.5
2241 Male, age 72, unknown 38.7
2699 Male, age 18, unknown 38.2
1851 Male, age 51, unknown 36.3
Superior colliculus
nTPM: 56.3
2261 Male, age 18, unknown 98.7
2087 Female, age 72, unknown 63.5
2664 Male, age 75, both hemispheres 61.3
1839 Male, age 51, unknown 58.2
2668 Female, age 75, unknown 57.1
1796 Male, age 53, unknown 51.4
1995 Male, age 72, unknown 50.2
1913 Female, age 42, unknown 43.7
2587 Male, age 74, left hemisphere 43.3
1895 Male, age 76, right hemisphere 35.4
Ventral tegmental area
nTPM: 46.6
2223 Female, age 72, unknown 54.4
2021 Male, age 53, unknown 51.4
2410 Female, age 72, unknown 47.1
1915 Female, age 42, unknown 44.5
1942 Male, age 51, unknown 41.7
2218 Male, age 76, both hemispheres 40.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.8
Samples: 183

Max nTPM: 34.3
Min nTPM: 0.0
Std nTPM: 6.2
Median nTPM: 13.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 34.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 33.1
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 29.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 26.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 25.4
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 25.1
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 24.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 24.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 24.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 24.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.9
FF:10158-103A5 76 years, female 49.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.9
Samples: 4

Max nTPM: 50.6
Min nTPM: 31.6
Sample A Female 46.4
Sample B Female 50.6
Sample C Male 38.9
Sample D Male 31.6
Midbrain
nTPM: 39.0
Samples: 4

Max nTPM: 64.8
Min nTPM: 28.5
Sample A Female 64.8
Sample B Female 31.9
Sample C Male 28.5
Sample D Male 30.9
Periaqueductal gray
nTPM: 44.2
Samples: 3

Max nTPM: 49.6
Min nTPM: 40.1
Sample B Female 40.1
Sample C Male 49.6
Sample D Male 42.9
Superior colliculi
nTPM: 47.8
Samples: 4

Max nTPM: 73.7
Min nTPM: 28.6
Sample A Female 56.7
Sample B Female 73.7
Sample C Male 28.6
Sample D Male 32.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 40.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.3
Samples: 4

Max nTPM: 43.8
Min nTPM: 35.2
Sample A Male 42.9
Sample B Male 39.2
Sample C Female 35.2
Sample D Female 43.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
79588290 Antisense, RP_071204_02_E01, Mouse strain C57BL/6J (56 days, male) 3.9
79750677 Antisense, RP_071204_02_E01, Mouse strain C57BL/6J (56 days, male) 2.7
441 Antisense, RP_Baylor_102779, Mouse strain C57BL/6J (56 days, male) 2.6
440 Antisense, RP_Baylor_102779, Mouse strain C57BL/6J (56 days, male) 1.7

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