MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA Brain:53.2 nTPM
GTEx:12.8 nTPM
FANTOM5:10.2 Scaled Tags Per Million
Pig:41.7 nTPM
Mouse:52.0 nTPM
Allen mouse:7.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.0
1827 Male, age 72, unknown 64.5
2586 Male, age 75, left hemisphere 62.1
2828 Female, age 72, unknown 53.5
2019 Male, age 18, unknown 52.5
2666 Male, age 74, left hemisphere 40.1
2219 Male, age 76, both hemispheres 36.8
2411 Female, age 72, unknown 34.3
1870 Female, age 42, unknown 27.4
1833 Male, age 53, unknown 25.0
1830 Male, age 51, unknown 23.8
Dorsal raphe nucleus
nTPM: 34.0
2298 Female, age 72, unknown 40.3
2047 Male, age 72, unknown 38.0
2750 Male, age 76, both hemispheres 31.4
2016 Female, age 72, unknown 31.2
1828 Male, age 53, unknown 29.0
Inferior colliculus
nTPM: 50.6
2097 Female, age 72, unknown 72.9
1890 Male, age 53, unknown 61.8
1848 Female, age 42, unknown 36.4
2849 Male, age 72, unknown 31.2
Median raphe nucleus
nTPM: 38.0
2220 Male, age 76, midline 38.0
Periaquaductal grey, anterior
nTPM: 43.3
1795 Male, age 51, unknown 57.3
2502 Female, age 75, unknown 43.2
1947 Male, age 18, unknown 29.3
Periaquaductal grey, dorsal
nTPM: 38.2
1831 Male, age 72, unknown 47.1
1840 Male, age 53, unknown 38.2
2464 Female, age 72, unknown 37.9
2850 Male, age 76, both hemispheres 29.8
Periaquaductal grey, lateral
nTPM: 29.9
2053 Male, age 18, unknown 35.4
2140 Male, age 76, both hemispheres 28.5
2272 Male, age 74, both hemispheres 25.8
Pretectal area
nTPM: 53.2
1816 Male, age 51, unknown 93.4
2007 Male, age 72, unknown 91.4
1815 Male, age 53, unknown 74.6
1817 Female, age 42, unknown 69.4
1944 Female, age 72, unknown 63.9
2667 Female, age 75, unknown 37.4
2224 Female, age 72, unknown 36.2
2407 Male, age 75, both hemispheres 32.4
2316 Male, age 76, right hemisphere 31.2
2273 Male, age 74, both hemispheres 30.9
2825 Male, age 18, unknown 24.9
Red nucleus
nTPM: 28.4
2785 Male, age 18, unknown 52.5
2725 Female, age 75, unknown 38.0
2588 Male, age 74, left hemisphere 35.0
2503 Female, age 72, unknown 30.4
2584 Male, age 75, left hemisphere 29.1
1954 Female, age 42, unknown 26.1
1821 Female, age 72, unknown 23.6
1865 Male, age 51, unknown 22.3
1904 Male, age 53, unknown 22.2
2823 Male, age 76, right hemisphere 22.2
2227 Male, age 72, unknown 20.1
2769 Male, age 72, unknown 19.7
Substantia nigra
nTPM: 30.7
1889 Female, age 72, unknown 56.0
2583 Male, age 75, right hemisphere 40.7
2665 Male, age 74, both hemispheres 34.4
1916 Female, age 42, unknown 33.2
2590 Female, age 75, unknown 27.1
1851 Male, age 51, unknown 26.4
1941 Male, age 53, unknown 25.5
2409 Female, age 72, unknown 23.4
2241 Male, age 72, unknown 21.3
2699 Male, age 18, unknown 18.6
Superior colliculus
nTPM: 43.0
1796 Male, age 53, unknown 59.6
2261 Male, age 18, unknown 58.0
2087 Female, age 72, unknown 52.8
2664 Male, age 75, both hemispheres 48.6
2668 Female, age 75, unknown 40.1
1913 Female, age 42, unknown 39.4
1995 Male, age 72, unknown 36.6
2587 Male, age 74, left hemisphere 32.5
1839 Male, age 51, unknown 32.3
1895 Male, age 76, right hemisphere 29.7
Ventral tegmental area
nTPM: 29.7
2410 Female, age 72, unknown 31.9
1942 Male, age 51, unknown 31.7
2218 Male, age 76, both hemispheres 31.5
2223 Female, age 72, unknown 29.8
1915 Female, age 42, unknown 27.7
2021 Male, age 53, unknown 25.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.8
Samples: 183

Max nTPM: 43.0
Min nTPM: 1.2
Std nTPM: 6.3
Median nTPM: 12.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 43.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 40.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 35.1
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 26.8
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 26.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 26.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 25.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 25.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 25.0
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 24.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 24.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.2
FF:10158-103A5 76 years, female 10.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.1
Samples: 4

Max nTPM: 21.2
Min nTPM: 14.6
Sample A Female 21.2
Sample B Female 14.6
Sample C Male 21.0
Sample D Male 15.6
Midbrain
nTPM: 40.9
Samples: 4

Max nTPM: 68.4
Min nTPM: 14.7
Sample A Female 28.7
Sample B Female 14.7
Sample C Male 68.4
Sample D Male 51.9
Periaqueductal gray
nTPM: 16.0
Samples: 3

Max nTPM: 17.7
Min nTPM: 14.7
Sample B Female 15.5
Sample C Male 17.7
Sample D Male 14.7
Superior colliculi
nTPM: 41.7
Samples: 4

Max nTPM: 63.4
Min nTPM: 31.9
Sample A Female 39.4
Sample B Female 31.9
Sample C Male 63.4
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 52.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.0
Samples: 4

Max nTPM: 59.7
Min nTPM: 47.4
Sample A Male 47.4
Sample B Male 48.6
Sample C Female 59.7
Sample D Female 52.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
72109467 Antisense, RP_050712_04_G12, Mouse strain C57BL/6J (56 days, male) 7.6
69012753 Antisense, RP_050309_01_D08, Mouse strain C57BL/6J (56 days, male) 6.5
70918946 Antisense, RP_050712_04_G12, Mouse strain C57BL/6J (56 days, male) 4.2

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