MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.5 nTPM
HPA Brain:167.8 nTPM
GTEx:65.5 nTPM
FANTOM5:107.8 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:6.0 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 167.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.1
2019 Male, age 18, unknown 148.6
1830 Male, age 51, unknown 147.7
2411 Female, age 72, unknown 147.6
1833 Male, age 53, unknown 134.8
1870 Female, age 42, unknown 129.2
2828 Female, age 72, unknown 105.7
2586 Male, age 75, left hemisphere 87.0
2666 Male, age 74, left hemisphere 84.1
2219 Male, age 76, both hemispheres 81.2
1827 Male, age 72, unknown 74.9
Dorsal raphe nucleus
nTPM: 98.3
2750 Male, age 76, both hemispheres 236.0
1828 Male, age 53, unknown 81.2
2016 Female, age 72, unknown 74.3
2047 Male, age 72, unknown 57.6
2298 Female, age 72, unknown 42.4
Inferior colliculus
nTPM: 67.0
1890 Male, age 53, unknown 71.8
1848 Female, age 42, unknown 71.7
2849 Male, age 72, unknown 69.9
2097 Female, age 72, unknown 54.3
Median raphe nucleus
nTPM: 93.0
2220 Male, age 76, midline 93.0
Periaquaductal grey, anterior
nTPM: 59.2
1947 Male, age 18, unknown 64.4
2502 Female, age 75, unknown 62.1
1795 Male, age 51, unknown 51.2
Periaquaductal grey, dorsal
nTPM: 43.6
2464 Female, age 72, unknown 65.5
1831 Male, age 72, unknown 56.1
1840 Male, age 53, unknown 28.0
2850 Male, age 76, both hemispheres 25.1
Periaquaductal grey, lateral
nTPM: 57.6
2272 Male, age 74, both hemispheres 79.4
2053 Male, age 18, unknown 64.6
2140 Male, age 76, both hemispheres 28.9
Pretectal area
nTPM: 70.4
2316 Male, age 76, right hemisphere 101.9
1815 Male, age 53, unknown 95.8
2407 Male, age 75, both hemispheres 84.0
2007 Male, age 72, unknown 77.2
1817 Female, age 42, unknown 70.3
2825 Male, age 18, unknown 69.2
2273 Male, age 74, both hemispheres 65.1
2667 Female, age 75, unknown 65.1
2224 Female, age 72, unknown 53.3
1944 Female, age 72, unknown 47.5
1816 Male, age 51, unknown 44.9
Red nucleus
nTPM: 167.8
2823 Male, age 76, right hemisphere 249.1
1865 Male, age 51, unknown 187.6
2769 Male, age 72, unknown 185.8
1904 Male, age 53, unknown 177.0
2227 Male, age 72, unknown 175.9
1821 Female, age 72, unknown 166.5
2785 Male, age 18, unknown 157.3
2588 Male, age 74, left hemisphere 156.9
2584 Male, age 75, left hemisphere 145.9
2503 Female, age 72, unknown 145.5
1954 Female, age 42, unknown 135.0
2725 Female, age 75, unknown 130.7
Substantia nigra
nTPM: 81.8
2583 Male, age 75, right hemisphere 113.7
1851 Male, age 51, unknown 101.2
2409 Female, age 72, unknown 97.5
1889 Female, age 72, unknown 94.9
2590 Female, age 75, unknown 84.1
2699 Male, age 18, unknown 78.7
1941 Male, age 53, unknown 75.4
1916 Female, age 42, unknown 65.8
2241 Male, age 72, unknown 53.6
2665 Male, age 74, both hemispheres 53.2
Superior colliculus
nTPM: 87.0
1995 Male, age 72, unknown 127.3
1913 Female, age 42, unknown 122.3
1895 Male, age 76, right hemisphere 103.9
2587 Male, age 74, left hemisphere 100.7
2668 Female, age 75, unknown 98.0
1839 Male, age 51, unknown 92.4
1796 Male, age 53, unknown 72.3
2087 Female, age 72, unknown 54.1
2664 Male, age 75, both hemispheres 51.1
2261 Male, age 18, unknown 47.9
Ventral tegmental area
nTPM: 105.1
2223 Female, age 72, unknown 167.9
2410 Female, age 72, unknown 115.8
2218 Male, age 76, both hemispheres 109.4
2021 Male, age 53, unknown 86.7
1942 Male, age 51, unknown 80.6
1915 Female, age 42, unknown 70.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.5
Samples: 183

Max nTPM: 358.2
Min nTPM: 4.8
Std nTPM: 47.7
Median nTPM: 53.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 358.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 298.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 271.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 207.3
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 161.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 152.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 151.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 151.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 149.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 148.7
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 143.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 107.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 107.8
FF:10158-103A5 76 years, female 107.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.2
Samples: 4

Max nTPM: 13.3
Min nTPM: 7.4
Sample A Female 8.3
Sample B Female 7.4
Sample C Male 11.8
Sample D Male 13.3
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 19.1
Min nTPM: 6.5
Sample A Female 19.1
Sample B Female 9.3
Sample C Male 7.0
Sample D Male 6.5
Periaqueductal gray
nTPM: 7.8
Samples: 3

Max nTPM: 8.1
Min nTPM: 7.5
Sample B Female 8.1
Sample C Male 7.5
Sample D Male 7.8
Superior colliculi
nTPM: 8.7
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.5
Sample A Female 7.9
Sample B Female 6.5
Sample C Male 10.9
Sample D Male 9.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.4
Sample A Male 7.3
Sample B Male 5.4
Sample C Female 5.6
Sample D Female 5.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69059801 Antisense, RP_050317_04_A06, Mouse strain C57BL/6J (56 days, male) 0.4
73617582 Antisense, RP_051130_02_A08, Mouse strain C57BL/6J (56 days, male) 0.3
77620357 Antisense, RP_070205_01_C04, Mouse strain C57BL/6J (56 days, male) 0.2

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