MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:22.1 nTPM
GTEx:24.3 nTPM
FANTOM5:13.3 Scaled Tags Per Million
Pig:80.1 nTPM
Mouse:35.9 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.4
1870 Female, age 42, unknown 20.4
2219 Male, age 76, both hemispheres 19.5
1827 Male, age 72, unknown 18.7
2411 Female, age 72, unknown 17.3
2828 Female, age 72, unknown 17.0
2586 Male, age 75, left hemisphere 16.5
2666 Male, age 74, left hemisphere 15.6
1833 Male, age 53, unknown 15.1
1830 Male, age 51, unknown 13.1
2019 Male, age 18, unknown 10.9
Dorsal raphe nucleus
nTPM: 22.1
2298 Female, age 72, unknown 28.9
2047 Male, age 72, unknown 25.0
1828 Male, age 53, unknown 19.8
2750 Male, age 76, both hemispheres 19.0
2016 Female, age 72, unknown 18.0
Inferior colliculus
nTPM: 17.5
2097 Female, age 72, unknown 20.0
1848 Female, age 42, unknown 17.0
2849 Male, age 72, unknown 16.6
1890 Male, age 53, unknown 16.3
Median raphe nucleus
nTPM: 22.0
2220 Male, age 76, midline 22.0
Periaquaductal grey, anterior
nTPM: 16.8
1795 Male, age 51, unknown 21.9
2502 Female, age 75, unknown 15.5
1947 Male, age 18, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 17.0
1840 Male, age 53, unknown 22.1
2850 Male, age 76, both hemispheres 16.3
1831 Male, age 72, unknown 15.9
2464 Female, age 72, unknown 13.7
Periaquaductal grey, lateral
nTPM: 19.0
2272 Male, age 74, both hemispheres 20.0
2053 Male, age 18, unknown 19.9
2140 Male, age 76, both hemispheres 17.2
Pretectal area
nTPM: 15.6
2224 Female, age 72, unknown 26.9
2825 Male, age 18, unknown 25.5
2273 Male, age 74, both hemispheres 18.1
2316 Male, age 76, right hemisphere 14.9
2667 Female, age 75, unknown 14.2
2407 Male, age 75, both hemispheres 13.7
2007 Male, age 72, unknown 13.5
1944 Female, age 72, unknown 13.4
1816 Male, age 51, unknown 10.6
1817 Female, age 42, unknown 10.3
1815 Male, age 53, unknown 10.1
Red nucleus
nTPM: 11.6
2725 Female, age 75, unknown 15.0
1821 Female, age 72, unknown 13.2
2584 Male, age 75, left hemisphere 13.2
2769 Male, age 72, unknown 13.1
2503 Female, age 72, unknown 12.6
2227 Male, age 72, unknown 12.2
2785 Male, age 18, unknown 11.1
2823 Male, age 76, right hemisphere 10.7
2588 Male, age 74, left hemisphere 10.5
1954 Female, age 42, unknown 10.0
1865 Male, age 51, unknown 9.2
1904 Male, age 53, unknown 8.7
Substantia nigra
nTPM: 16.6
1916 Female, age 42, unknown 23.0
1941 Male, age 53, unknown 19.7
1851 Male, age 51, unknown 19.3
2699 Male, age 18, unknown 19.2
2241 Male, age 72, unknown 16.5
2409 Female, age 72, unknown 16.0
1889 Female, age 72, unknown 14.1
2590 Female, age 75, unknown 14.0
2583 Male, age 75, right hemisphere 12.2
2665 Male, age 74, both hemispheres 11.9
Superior colliculus
nTPM: 14.7
1796 Male, age 53, unknown 21.1
1839 Male, age 51, unknown 18.2
1895 Male, age 76, right hemisphere 15.4
2664 Male, age 75, both hemispheres 15.2
2587 Male, age 74, left hemisphere 14.5
2668 Female, age 75, unknown 14.1
1913 Female, age 42, unknown 13.0
2261 Male, age 18, unknown 13.0
2087 Female, age 72, unknown 11.7
1995 Male, age 72, unknown 10.7
Ventral tegmental area
nTPM: 20.4
1915 Female, age 42, unknown 23.8
1942 Male, age 51, unknown 21.4
2218 Male, age 76, both hemispheres 20.8
2021 Male, age 53, unknown 20.6
2410 Female, age 72, unknown 18.9
2223 Female, age 72, unknown 16.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.3
Samples: 183

Max nTPM: 48.0
Min nTPM: 8.7
Std nTPM: 7.5
Median nTPM: 23.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 48.0
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 46.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 43.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 42.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 41.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 40.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 39.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 38.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 38.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 38.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 38.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.3
FF:10158-103A5 76 years, female 13.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 80.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.4
Samples: 4

Max nTPM: 88.0
Min nTPM: 41.3
Sample A Female 88.0
Sample B Female 41.3
Sample C Male 55.0
Sample D Male 81.2
Midbrain
nTPM: 80.1
Samples: 4

Max nTPM: 179.4
Min nTPM: 34.3
Sample A Female 179.4
Sample B Female 62.5
Sample C Male 34.3
Sample D Male 44.1
Periaqueductal gray
nTPM: 51.0
Samples: 3

Max nTPM: 55.0
Min nTPM: 47.4
Sample B Female 55.0
Sample C Male 47.4
Sample D Male 50.6
Superior colliculi
nTPM: 58.8
Samples: 4

Max nTPM: 84.0
Min nTPM: 36.4
Sample A Female 84.0
Sample B Female 36.4
Sample C Male 54.9
Sample D Male 59.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 40.1
Min nTPM: 30.9
Sample A Male 35.3
Sample B Male 37.4
Sample C Female 30.9
Sample D Female 40.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69782676 Antisense, RP_050505_03_E05, Mouse strain C57BL/6J (56 days, male) 0.3

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