MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.8 nTPM
HPA Brain:53.0 nTPM
GTEx:49.8 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:41.5 nTPM
Mouse:21.9 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.1
2586 Male, age 75, left hemisphere 63.9
2019 Male, age 18, unknown 55.6
2411 Female, age 72, unknown 53.4
2828 Female, age 72, unknown 51.8
1870 Female, age 42, unknown 50.9
1827 Male, age 72, unknown 48.9
1833 Male, age 53, unknown 46.2
2666 Male, age 74, left hemisphere 45.1
1830 Male, age 51, unknown 43.6
2219 Male, age 76, both hemispheres 41.7
Dorsal raphe nucleus
nTPM: 47.1
2298 Female, age 72, unknown 53.4
2750 Male, age 76, both hemispheres 49.5
2016 Female, age 72, unknown 46.0
1828 Male, age 53, unknown 43.4
2047 Male, age 72, unknown 43.4
Inferior colliculus
nTPM: 47.3
2097 Female, age 72, unknown 53.8
1890 Male, age 53, unknown 48.2
1848 Female, age 42, unknown 45.7
2849 Male, age 72, unknown 41.4
Median raphe nucleus
nTPM: 38.4
2220 Male, age 76, midline 38.4
Periaquaductal grey, anterior
nTPM: 51.4
2502 Female, age 75, unknown 55.6
1795 Male, age 51, unknown 49.9
1947 Male, age 18, unknown 48.6
Periaquaductal grey, dorsal
nTPM: 40.1
2464 Female, age 72, unknown 48.3
1840 Male, age 53, unknown 42.7
1831 Male, age 72, unknown 36.4
2850 Male, age 76, both hemispheres 33.1
Periaquaductal grey, lateral
nTPM: 39.5
2053 Male, age 18, unknown 41.5
2140 Male, age 76, both hemispheres 38.7
2272 Male, age 74, both hemispheres 38.4
Pretectal area
nTPM: 45.2
2667 Female, age 75, unknown 52.4
2007 Male, age 72, unknown 50.9
1817 Female, age 42, unknown 47.1
1815 Male, age 53, unknown 46.8
1816 Male, age 51, unknown 45.6
1944 Female, age 72, unknown 44.2
2273 Male, age 74, both hemispheres 43.4
2825 Male, age 18, unknown 42.4
2224 Female, age 72, unknown 42.3
2407 Male, age 75, both hemispheres 42.2
2316 Male, age 76, right hemisphere 40.2
Red nucleus
nTPM: 53.0
1904 Male, age 53, unknown 57.3
2769 Male, age 72, unknown 57.0
2503 Female, age 72, unknown 56.6
1954 Female, age 42, unknown 56.0
1821 Female, age 72, unknown 55.7
2785 Male, age 18, unknown 55.2
2227 Male, age 72, unknown 54.8
1865 Male, age 51, unknown 54.2
2588 Male, age 74, left hemisphere 51.4
2823 Male, age 76, right hemisphere 48.5
2725 Female, age 75, unknown 47.8
2584 Male, age 75, left hemisphere 42.0
Substantia nigra
nTPM: 46.4
1851 Male, age 51, unknown 55.0
1916 Female, age 42, unknown 52.9
2583 Male, age 75, right hemisphere 49.2
1889 Female, age 72, unknown 47.2
2241 Male, age 72, unknown 46.3
2409 Female, age 72, unknown 44.7
1941 Male, age 53, unknown 44.6
2590 Female, age 75, unknown 42.4
2665 Male, age 74, both hemispheres 41.7
2699 Male, age 18, unknown 40.3
Superior colliculus
nTPM: 46.9
1995 Male, age 72, unknown 50.5
1913 Female, age 42, unknown 49.8
2261 Male, age 18, unknown 49.1
1796 Male, age 53, unknown 48.7
2664 Male, age 75, both hemispheres 48.0
1895 Male, age 76, right hemisphere 46.3
2087 Female, age 72, unknown 46.0
2668 Female, age 75, unknown 44.8
2587 Male, age 74, left hemisphere 43.3
1839 Male, age 51, unknown 42.9
Ventral tegmental area
nTPM: 46.8
2410 Female, age 72, unknown 53.0
1942 Male, age 51, unknown 48.4
1915 Female, age 42, unknown 48.1
2223 Female, age 72, unknown 44.5
2021 Male, age 53, unknown 43.8
2218 Male, age 76, both hemispheres 42.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.8
Samples: 183

Max nTPM: 129.4
Min nTPM: 25.0
Std nTPM: 13.0
Median nTPM: 47.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 129.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 91.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 88.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 88.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 88.0
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 87.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 85.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 73.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 72.8
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 72.2
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 71.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.0
FF:10158-103A5 76 years, female 17.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.7
Samples: 4

Max nTPM: 43.1
Min nTPM: 37.3
Sample A Female 38.7
Sample B Female 37.3
Sample C Male 39.7
Sample D Male 43.1
Midbrain
nTPM: 41.6
Samples: 4

Max nTPM: 46.4
Min nTPM: 38.6
Sample A Female 46.4
Sample B Female 38.6
Sample C Male 42.3
Sample D Male 38.9
Periaqueductal gray
nTPM: 38.1
Samples: 3

Max nTPM: 39.6
Min nTPM: 35.7
Sample B Female 39.1
Sample C Male 39.6
Sample D Male 35.7
Superior colliculi
nTPM: 41.2
Samples: 4

Max nTPM: 42.3
Min nTPM: 40.3
Sample A Female 40.3
Sample B Female 41.2
Sample C Male 42.3
Sample D Male 40.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 24.3
Min nTPM: 20.6
Sample A Male 24.3
Sample B Male 20.6
Sample C Female 20.9
Sample D Female 21.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
75831721 Antisense, RP_060601_02_A06, Mouse strain C57BL/6J (56 days, male) 2.3

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