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CLDND1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CLDND1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:256.0 nTPM
FANTOM5:242.8 Scaled Tags Per Million
Pig:37.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA029841
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

256.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 256.0
Samples: 300

Max nTPM: 1270.9
Min nTPM: 76.9
Std nTPM: 142.5
Median nTPM: 227.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1270.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1120.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 752.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 729.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 726.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 632.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 610.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 608.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 585.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 573.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 568.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 565.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 536.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 515.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 509.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 505.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 480.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 476.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 467.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 458.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 457.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 456.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 456.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 456.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 453.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 441.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 435.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 434.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 431.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 424.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 424.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 423.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 421.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 415.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 415.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 412.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 405.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 404.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 395.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 383.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 382.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 380.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 378.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 370.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 369.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 365.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 364.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 360.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 358.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 354.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 353.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 352.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 351.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 350.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 349.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 347.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 343.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 336.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 329.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 328.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 328.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 323.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 323.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 319.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 318.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 317.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 316.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 313.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 312.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 312.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 311.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 310.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 304.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 304.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 302.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 299.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 293.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 292.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 290.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 288.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 287.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 286.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 285.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 285.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 284.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 282.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 281.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 281.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 280.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 280.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 279.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 277.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 277.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 277.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 276.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 276.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 276.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 275.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 274.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 274.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 271.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 270.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 265.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 263.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 255.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 254.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 254.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 254.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 253.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 253.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 249.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 248.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 247.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 247.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 247.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 246.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 245.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 245.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 245.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 244.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 242.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 242.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 242.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 241.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 241.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 240.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 240.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 239.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 239.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 239.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 238.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 237.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 237.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 237.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 236.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 236.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 235.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 235.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 234.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 234.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 234.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 232.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 232.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 232.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 230.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 228.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 228.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 228.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 228.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 228.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 227.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 227.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 225.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 222.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 221.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 218.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 218.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 217.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 217.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 216.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 215.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 213.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 213.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 213.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 212.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 212.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 212.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 210.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 209.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 208.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 207.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 206.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 205.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 204.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 202.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 201.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 199.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 199.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 199.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 199.3
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 198.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 194.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 193.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 193.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 193.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 192.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 192.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 191.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 191.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 191.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 190.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 188.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 186.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 186.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 185.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 184.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 184.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 184.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 184.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 182.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 182.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 181.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 181.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 181.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 180.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 180.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 179.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 179.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 177.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 177.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 177.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 177.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 177.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 177.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 176.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 175.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 175.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 172.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 172.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 172.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 172.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 171.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 170.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 169.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 169.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 168.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 167.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 167.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 165.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 165.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 164.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 163.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 163.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 159.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 159.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 158.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 154.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 152.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 152.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 151.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 151.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 150.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 149.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 149.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 148.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 148.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 146.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 146.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 146.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 144.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 143.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 143.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 142.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 140.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 139.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 138.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 138.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 138.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 138.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 137.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 137.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 135.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 135.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 134.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 134.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 134.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 134.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 134.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 132.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 129.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 126.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 126.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 125.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 125.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 124.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 123.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 122.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 122.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 121.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 120.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 119.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 118.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 118.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 115.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 113.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 112.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 112.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 111.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 108.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 107.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 99.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 98.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 97.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 97.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 96.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 95.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 95.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 90.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 90.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 76.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

242.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 242.8
FF:10164-103B2 76 years, female 242.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.6
Pig sample Sample description nTPM
Caudate
nTPM: 37.7
Samples: 4

Max nTPM: 40.2
Min nTPM: 33.4
Sample A Female 40.2
Sample B Female 38.3
Sample C Male 33.4
Sample D Male 38.7

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