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HSP90AA1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • HSP90AA1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:600.5 nTPM
FANTOM5:1404.3 Scaled Tags Per Million
Pig:813.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB002058
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

600.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 600.5
Samples: 300

Max nTPM: 4408.3
Min nTPM: 290.1
Std nTPM: 392.0
Median nTPM: 502.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 4408.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 3426.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2140.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 2117.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1954.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1880.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1852.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1521.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1439.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1438.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 1272.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1242.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1235.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1212.4
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1193.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1142.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1127.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1127.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1123.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1111.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1103.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1096.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1000.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 995.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 963.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 958.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 954.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 950.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 947.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 935.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 916.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 874.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 845.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 833.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 820.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 811.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 807.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 799.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 790.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 782.2
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 780.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 770.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 769.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 768.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 765.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 757.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 748.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 735.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 734.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 729.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 726.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 717.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 716.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 713.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 698.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 697.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 694.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 688.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 686.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 678.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 674.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 662.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 662.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 660.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 658.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 655.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 654.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 645.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 642.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 641.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 640.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 639.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 633.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 630.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 630.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 628.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 621.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 620.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 617.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 613.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 611.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 609.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 608.3
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 607.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 599.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 594.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 590.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 588.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 585.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 582.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 582.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 582.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 576.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 576.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 576.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 574.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 572.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 571.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 571.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 571.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 567.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 561.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 559.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 558.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 557.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 556.6
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 556.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 552.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 551.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 546.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 546.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 546.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 545.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 544.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 544.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 542.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 537.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 537.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 534.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 532.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 532.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 531.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 529.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 529.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 529.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 525.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 524.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 524.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 523.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 523.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 522.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 520.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 520.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 519.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 517.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 515.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 514.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 514.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 514.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 512.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 512.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 511.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 510.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 510.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 509.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 506.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 505.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 505.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 503.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 502.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 502.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 502.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 502.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 501.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 501.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 500.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 497.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 494.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 494.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 494.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 493.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 490.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 488.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 487.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 486.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 486.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 483.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 479.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 478.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 477.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 475.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 475.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 474.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 473.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 472.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 470.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 469.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 469.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 469.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 469.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 468.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 468.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 466.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 466.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 464.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 461.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 458.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 458.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 457.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 455.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 455.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 453.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 452.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 451.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 450.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 447.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 446.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 446.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 446.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 445.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 444.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 443.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 442.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 442.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 442.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 441.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 438.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 437.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 435.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 434.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 433.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 432.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 432.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 431.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 428.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 427.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 423.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 422.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 422.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 421.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 421.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 420.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 418.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 418.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 417.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 416.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 416.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 413.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 412.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 412.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 411.6
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 409.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 408.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 407.2
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 406.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 403.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 402.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 402.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 402.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 402.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 402.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 400.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 400.6
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 400.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 399.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 399.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 399.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 399.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 398.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 394.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 394.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 392.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 391.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 390.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 387.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 385.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 385.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 385.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 384.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 384.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 382.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 381.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 381.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 380.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 379.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 378.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 374.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 373.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 371.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 370.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 369.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 367.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 367.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 365.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 364.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 362.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 361.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 360.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 354.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 350.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 348.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 347.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 344.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 342.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 338.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 337.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 336.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 332.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 328.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 328.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 327.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 326.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 324.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 316.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 312.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 312.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 305.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 301.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 295.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 290.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1404.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1404.3
FF:10164-103B2 76 years, female 1404.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

813.6
Pig sample Sample description nTPM
Caudate
nTPM: 813.6
Samples: 4

Max nTPM: 884.6
Min nTPM: 756.9
Sample A Female 808.5
Sample B Female 804.3
Sample C Male 884.6
Sample D Male 756.9

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