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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1044.8 nTPM
GTEx:1044.8 nTPM
FANTOM5:370.4 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1044.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1044.8
Samples: 105

Max nTPM: 2416.2
Min nTPM: 586.3
Std nTPM: 320.1
Median nTPM:
99_1 64 years, male 2416.2
491_1 89 years, female 2327.5
490_1 67 years, female 1901.4
379_1 60 years, male 1658.4
447_1 81 years, male 1576.6
415_1 77 years, female 1555.6
162_1 79 years, female 1507.6
317_1 60 years, male 1450.9
42_1 85 years, male 1432.6
32_1 67 years, male 1423.4
347_1 72 years, male 1422.9
117_1 61 years, male 1373.3
120_1 70 years, female 1369.2
413_1 59 years, female 1362.1
386_1 76 years, male 1356.4
375_1 74 years, female 1344.8
115_1 83 years, male 1286.0
315_1 62 years, female 1284.1
355_1 70 years, female 1273.4
109_1 81 years, female 1265.4
6_1 73 years, female 1258.2
265_1 87 years, male 1253.4
142_1 61 years, female 1252.6
414_1 84 years, female 1246.1
352_1 62 years, male 1230.4
266_1 85 years, male 1225.9
119_1 70 years, female 1221.4
9_1 66 years, female 1209.2
324_1 76 years, male 1200.4
43_1 64 years, female 1192.4
468_1 89 years, male 1182.8
172_1 72 years, female 1180.8
217_1 76 years, male 1173.7
229_1 69 years, female 1170.8
396_1 62 years, male 1159.8
149_1 88 years, male 1151.2
307_1 66 years, female 1130.5
89_1 63 years, male 1108.5
126_1 63 years, male 1107.4
173_1 67 years, male 1083.4
246_1 77 years, male 1058.4
254_1 77 years, female 1055.6
349_1 83 years, male 1055.3
389_1 86 years, female 1046.2
153_1 70 years, female 1045.9
480_1 63 years, male 1043.9
404_1 82 years, female 1041.4
526_1 61 years, male 1039.8
466_1 57 years, female 1030.1
321_1 62 years, female 1025.2
237_1 82 years, male 1016.6
384_1 83 years, male 1008.2
243_1 75 years, male 1005.6
313_1 79 years, female 1002.2
189_1 76 years, male 979.6
35_1 74 years, female 972.0
145_1 84 years, male 963.5
177_1 74 years, male 956.1
314_1 67 years, male 955.9
41_1 94 years, female 929.8
348_1 84 years, male 928.6
316_1 62 years, male 928.2
376_1 75 years, female 922.3
286_1 68 years, female 919.6
319_1 81 years, male 912.1
499_1 55 years, female 906.9
354_1 81 years, female 905.1
291_1 76 years, male 881.2
311_1 78 years, male 862.2
350_1 84 years, female 856.6
518_1 75 years, female 854.5
308_1 70 years, female 854.2
503_1 68 years, male 849.5
335_1 73 years, female 840.4
405_1 91 years, male 838.4
356_1 87 years, female 837.2
394_1 75 years, female 836.1
17_1 71 years, male 830.5
501_1 88 years, male 829.8
425_1 59 years, female 804.5
139_1 64 years, female 795.2
81_1 67 years, male 786.5
377_1 82 years, female 786.1
351_1 91 years, male 785.0
452_1 88 years, female 778.1
137_1 83 years, male 760.0
18_1 88 years, male 757.7
163_1 78 years, male 747.5
292_1 71 years, male 742.0
251_1 78 years, male 739.5
495_1 57 years, female 723.2
353_1 82 years, female 719.5
4_1 88 years, female 717.9
218_1 71 years, female 709.9
2_1 77 years, female 705.0
264_1 73 years, female 702.7
288_1 66 years, female 693.9
406_1 79 years, male 693.5
517_1 88 years, male 688.4
506_1 65 years, male 685.7
318_1 68 years, male 676.0
320_1 89 years, female 592.7
322_1 76 years, male 590.2
295_1 61 years, female 589.3
293_1 68 years, female 586.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

370.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 370.4
FF:10030-101E3 24-65 years, mixed 370.4

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