We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
IMPG2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • IMPG2
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:282.9 nTPM
GTEx:282.9 nTPM
FANTOM5:125.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA008779
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Low
Inner plexiform layer Not detected
Ganglion cells Medium
Nerve fiber layer Not detected

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA015907
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

282.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 282.9
Samples: 105

Max nTPM: 626.5
Min nTPM: 111.4
Std nTPM: 86.5
Median nTPM:
490_1 67 years, female 626.5
117_1 61 years, male 474.6
491_1 89 years, female 453.9
89_1 63 years, male 447.2
217_1 76 years, male 435.8
526_1 61 years, male 424.8
32_1 67 years, male 420.0
311_1 78 years, male 407.2
415_1 77 years, female 403.3
139_1 64 years, female 389.7
495_1 57 years, female 387.2
6_1 73 years, female 386.5
149_1 88 years, male 383.7
162_1 79 years, female 383.0
119_1 70 years, female 381.3
499_1 55 years, female 371.4
447_1 81 years, male 369.9
347_1 72 years, male 369.0
324_1 76 years, male 361.6
81_1 67 years, male 357.2
321_1 62 years, female 352.8
414_1 84 years, female 350.3
307_1 66 years, female 346.8
466_1 57 years, female 346.3
313_1 79 years, female 345.6
142_1 61 years, female 340.2
251_1 78 years, male 339.1
126_1 63 years, male 335.6
43_1 64 years, female 332.6
9_1 66 years, female 331.9
2_1 77 years, female 331.4
348_1 84 years, male 330.0
352_1 62 years, male 326.6
35_1 74 years, female 315.8
246_1 77 years, male 315.7
468_1 89 years, male 312.4
266_1 85 years, male 312.0
293_1 68 years, female 310.5
153_1 70 years, female 307.8
18_1 88 years, male 307.2
115_1 83 years, male 303.2
229_1 69 years, female 300.7
145_1 84 years, male 294.8
315_1 62 years, female 292.0
322_1 76 years, male 290.1
518_1 75 years, female 288.1
350_1 84 years, female 285.5
99_1 64 years, male 280.0
425_1 59 years, female 278.4
172_1 72 years, female 277.6
237_1 82 years, male 276.4
480_1 63 years, male 275.2
413_1 59 years, female 272.4
375_1 74 years, female 270.3
286_1 68 years, female 270.0
389_1 86 years, female 269.9
42_1 85 years, male 266.1
355_1 70 years, female 265.6
120_1 70 years, female 264.9
406_1 79 years, male 261.8
386_1 76 years, male 261.3
319_1 81 years, male 259.0
317_1 60 years, male 254.6
292_1 71 years, male 251.9
137_1 83 years, male 249.2
405_1 91 years, male 248.7
308_1 70 years, female 247.1
109_1 81 years, female 242.0
335_1 73 years, female 241.1
173_1 67 years, male 238.1
243_1 75 years, male 237.2
503_1 68 years, male 234.9
396_1 62 years, male 234.4
316_1 62 years, male 234.3
189_1 76 years, male 230.7
17_1 71 years, male 229.8
41_1 94 years, female 229.6
291_1 76 years, male 227.9
218_1 71 years, female 226.2
517_1 88 years, male 225.7
320_1 89 years, female 224.5
265_1 87 years, male 222.5
384_1 83 years, male 222.1
177_1 74 years, male 221.6
254_1 77 years, female 219.4
318_1 68 years, male 217.7
376_1 75 years, female 209.2
349_1 83 years, male 205.6
404_1 82 years, female 200.0
354_1 81 years, female 191.2
351_1 91 years, male 189.8
377_1 82 years, female 186.4
353_1 82 years, female 182.1
163_1 78 years, male 177.8
394_1 75 years, female 176.3
379_1 60 years, male 175.5
4_1 88 years, female 166.3
356_1 87 years, female 164.7
314_1 67 years, male 152.6
288_1 66 years, female 150.1
501_1 88 years, male 147.0
264_1 73 years, female 145.1
506_1 65 years, male 117.2
295_1 61 years, female 113.5
452_1 88 years, female 111.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 125.9
FF:10030-101E3 24-65 years, mixed 125.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo