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CYLD
HPA
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Keyword
Chromosome
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Cell type
Expression
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Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
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Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
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Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
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Category
Tau score
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Cluster
Location
Searches
Location
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Cancer
Prognosis
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Category
Cancer
Category
Tau score
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Variants
Interacting gene (ensg_id)
Type
Number of interactions
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ipTM
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Category
Validation
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Validation
Antibodies
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Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CYLD
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
ISOLATED
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CYLD
Synonyms CYLD1, KIAA0849, USPL2
Gene descriptioni

Full gene name according to HGNC.

CYLD lysine 63 deubiquitinase
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Cancer-related genes
Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Dendritic cells - Antigen presentation (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Cell type enhanced (Neutrophils)
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Bone marrow - Nuclear processes (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Tissue enhanced (Bone marrow)
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Centriolar satellite In addition localized to the Nucleoplasm, Primary cilium transition zone, Basal body, Principal piece
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 16
Cytoband q12.1
Chromosome location (bp) 50742050 - 50801935
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

11
Ensembl ENSG00000083799 (version 109)
Entrez gene 1540
HGNC HGNC:2584
UniProt Q9NQC7
GeneCards CYLD
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Bone marrow - Nuclear processes

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
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PAE plot
Number of interactions: 9
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
HDAC6161916712
IKBKG44629850
SPATA23171020
TUBA1A129900121
YWHAB183933372450
YWHAE23512338332412
YWHAG25427143322213
YWHAH130363951446
YWHAZ2221643483248
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 5 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
HDAC6161916712
IKBKG44629850
RIGI483500
SPATA23171020
TUBA1A129900121
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 122
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
AKT15314319724
ALB0111015
AMOT985761
ATAD3A033310
ATP5F1A9871211
AURKB132097318
BCL3142000
CAD223992
CAPRIN1163491350
CAPZA19942128
CCT253121283697
CCT33111932060
CCT4245713235
CCT6A2710823756
CDKN2C319714
CENPV014902
CEP131662770
CEP135599831
CEP192262242
CEP350632183
CLIP305400
CLTC12139860
CSE1L684340
CTNNB147852851313
CTPS1221181
CUL3404577120
DCTN2183537130
DDB214440123
DDX3X6129400
DHX309641330
DYNC1H1173761331
EEA1571560
EGFR18727545806
EIF4B6549130
EIF4G110963260
ELAVL1193149260
EZR8188954
FASN263994
FLNA7188660
FZR111710450
GAPDH92997121
GRIA105900
GRIA2111400
GRSF12117020
HDAC6161916712
HNRNPC4334114500
IKBKE8212200
IKBKG44629850
ILF2148903224
ILF38461761551
IMPDH2272722
ITCH161810700
KLHL2100800
KRT812204200
LARP1674700
LMNA1754239323
MAP1B434872
MAP3K711137644
MAP42131410
MAPK3111768212
MAPRE15437931984
MATR341411600
MATR380116140
MIB1433715
MIB201900
MYH91013105262
NINL4118400
NOD217252700
OPTN2312871214
PCBP110188021
PCBP2443420
PCM1142015500
PDIA6162310
PHB2248121
PLEC274310
PLK13551218510
PLK45201520
PRNP91729400
PRRC2C002300
PSMC63646603313
PSMD113917593913
PSMD13352051390
PSMD43834992416
PTBP1675330
PTPA121700
RIPK113185709
RNF16624804
RNF316124900
SEPTIN9642790
SERBP1166151350
SHARPIN8624017
SMAD7574600
SPATA23171020
SPATA2L116200
SQSTM1324031220
SSB2875213210
STAU13213371390
STING111222806
TAB28184421
TBK1223074114
TCP12311851957
TNF3363400
TNFRSF1A584100
TNRC6B644050
TP5312316670450
TRAF25324012520
TRAF6316015503
TRAIP081200
TRIM2132410700
TRIM4710604
TUBA1A129900121
TUBG11065583
UBC355946340
UPF1331789520
VIM36881091425
XPO12571292910
YWHAB183933372450
YWHAE23512338332412
YWHAG25427143322213
YWHAH130363951446
YWHAQ9061318796
YWHAZ2221643483248
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 5
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
YWHAB183933372450
YWHAE23512338332412
YWHAG25427143322213
YWHAH130363951446
YWHAZ2221643483248
CYLD has no defined protein interactions in BioPlex.
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene CYLD is associated with 1 reactions in 1 different subsystems, and present in the compartments: Cytosol. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Isolated Cytosol, Mitochondria, Peroxisome, Endoplasmic reticulum, Extracellular, Nucleus, Golgi apparatus 524 320 1
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CYLD-201 Q9NQC7
Enzymes
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
956 aa
107.3 kDa
No 0
CYLD-202 Q9NQC7
A0A024R6T1
Enzymes
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
953 aa
107 kDa
No 0
CYLD-203 Q9NQC7
Enzymes
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Protein evidence (Ezkurdia et al 2014)
Show all
956 aa
107.3 kDa
No 0
CYLD-204 J3QKR2
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
104 aa
11.9 kDa
No 0
CYLD-207 Q9NQC7
A0A024R6T1
Enzymes
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Protein evidence (Ezkurdia et al 2014)
Show all
953 aa
107 kDa
No 0
CYLD-208 H3BPZ5
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
33 aa
4 kDa
No 0
CYLD-209 I3L117
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
66 aa
7.2 kDa
No 0
CYLD-210 J3KRR7
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
910 aa
101.9 kDa
No 0
CYLD-211 H3BSW9
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
304 aa
33.9 kDa
No 0
CYLD-212 H3BS09
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Human disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
771 aa
87.4 kDa
No 0
CYLD-214 Q9NQC7
A0A024R6T1
Enzymes
Metabolic proteins
Predicted intracellular proteins
Cancer-related genes
Disease related genes
Potential drug targets
Human disease related genes
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
953 aa
107 kDa
No 0
Show allShow less

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