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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.7
nTPM
Monaco:
5.7
nTPM
Schmiedel:
3.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.7
HPA sample
nTPM
gdT-cell nTPM: 13.6
Samples: 6
Max nTPM: 18.4
Min nTPM: 8.9
P10809_1007
8.9
P10809_1022
13.9
P10809_1041
18.4
P10809_1060
14.8
P10809_1077
15.0
P10809_1098
10.6
MAIT T-cell nTPM: 29.7
Samples: 6
Max nTPM: 49.5
Min nTPM: 12.8
P10809_1006
12.8
P10809_1024
49.5
P10809_1043
36.9
P10809_1062
31.7
P10809_1083
24.0
P10809_1097
23.2
Memory CD4 T-cell nTPM: 17.5
Samples: 6
Max nTPM: 24.1
Min nTPM: 11.8
P10809_1014
12.5
P10809_1026
24.1
P10809_1045
21.8
P10809_1064
14.6
P10809_1086
11.8
P10809_1113
20.4
Memory CD8 T-cell nTPM: 18.0
Samples: 5
Max nTPM: 29.7
Min nTPM: 10.5
P10809_1012
10.5
P10809_1027
13.1
P10809_1046
29.7
P10809_1065
17.9
P10809_1111
18.8
Naive CD4 T-cell nTPM: 21.4
Samples: 6
Max nTPM: 42.2
Min nTPM: 8.9
P10809_1015
8.9
P10809_1030
17.6
P10809_1049
42.2
P10809_1068
19.8
P10809_1085
14.9
P10809_1112
25.1
Naive CD8 T-cell nTPM: 21.8
Samples: 6
Max nTPM: 37.5
Min nTPM: 10.4
P10809_1016
18.8
P10809_1031
10.4
P10809_1050
37.5
P10809_1069
21.5
P10809_1087
10.8
P10809_1110
31.9
T-reg nTPM: 23.4
Samples: 6
Max nTPM: 30.2
Min nTPM: 6.4
P10809_1018
6.4
P10809_1037
30.2
P10809_1056
23.1
P10809_1075
26.8
P10809_1094
28.2
P10809_1106
25.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 3.8
Samples: 4
Max nTPM: 7.8
Min nTPM: 2.3
RHH5202_R3573
2.3
RHH5230_R3602
2.4
RHH5259_R3631
2.8
RHH5288_R3660
7.8
Effector memory CD8 T-cell nTPM: 1.8
Samples: 4
Max nTPM: 5.6
Min nTPM: 0.0
RHH5203_R3574
0.7
RHH5231_R3603
0.0
RHH5260_R3632
5.6
RHH5289_R3661
0.7
MAIT T-cell nTPM: 5.5
Samples: 4
Max nTPM: 6.8
Min nTPM: 4.1
RHH5233_R3605
5.3
RHH5205_R3576
5.6
RHH5262_R3634
6.8
RHH5297_R3663
4.1
Memory CD4 T-cell TFH nTPM: 3.6
Samples: 4
Max nTPM: 13.5
Min nTPM: 0.0
RHH5300_R3666
0.9
RHH5236_R3608
13.5
RHH5265_R3637
0.0
RHH5208_R3579
0.1
Memory CD4 T-cell Th1 nTPM: 1.9
Samples: 4
Max nTPM: 3.7
Min nTPM: 0.0
RHH5210_R3581
0.0
RHH5302_R3668
3.0
RHH5238_R3610
0.8
RHH5267_R3639
3.7
Memory CD4 T-cell Th1/Th17 nTPM: 3.1
Samples: 4
Max nTPM: 6.1
Min nTPM: 1.8
RHH5303_R3669
2.1
RHH5211_R3582
2.3
RHH5239_R3611
6.1
RHH5268_R3640
1.8
Memory CD4 T-cell Th17 nTPM: 2.4
Samples: 4
Max nTPM: 4.0
Min nTPM: 1.1
RHH5304_R3670
4.0
RHH5212_R3583
1.8
RHH5240_R3612
2.8
RHH5269_R3641
1.1
Memory CD4 T-cell Th2 nTPM: 2.4
Samples: 4
Max nTPM: 5.3
Min nTPM: 0.0
RHH5305_R3671
2.8
RHH5213_R3584
5.3
RHH5241_R3613
0.0
RHH5270_R3642
1.4
Naive CD4 T-cell nTPM: 5.7
Samples: 4
Max nTPM: 11.4
Min nTPM: 2.7
RHH5306_R3672
11.4
RHH5214_R3585
3.5
RHH5242_R3614
2.7
RHH5271_R3643
5.0
Naive CD8 T-cell nTPM: 5.5
Samples: 4
Max nTPM: 8.6
Min nTPM: 2.3
RHH5201_R3572
5.8
RHH5229_R3601
2.3
RHH5258_R3630
5.3
RHH5287_R3659
8.6
Non-Vd2 gdTCR nTPM: 4.5
Samples: 4
Max nTPM: 8.3
Min nTPM: 0.0
RHH5235_R3607
3.8
RHH5264_R3636
5.7
RHH5207_R3578
0.0
RHH5299_R3665
8.3
T-reg nTPM: 3.4
Samples: 4
Max nTPM: 4.8
Min nTPM: 0.8
RHH5301_R3667
4.8
RHH5237_R3609
3.7
RHH5266_R3638
4.1
RHH5209_R3580
0.8
Terminal effector memory CD4 T-cell nTPM: 1.7
Samples: 2
Max nTPM: 2.0
Min nTPM: 1.4
RHH5243_R3615
1.4
RHH5272_R3644
2.0
Terminal effector memory CD8 T-cell nTPM: 3.4
Samples: 4
Max nTPM: 6.6
Min nTPM: 0.0
RHH5232_R3604
0.0
RHH5204_R3575
4.7
RHH5261_R3633
6.6
RHH5296_R3662
2.4
Vd2 gdTCR nTPM: 4.7
Samples: 4
Max nTPM: 5.5
Min nTPM: 4.0
RHH5234_R3606
5.0
RHH5206_R3577
4.4
RHH5263_R3635
4.0
RHH5298_R3664
5.5
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
