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ZNF586
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  • ZNF586
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:31.5 nTPM
FANTOM5:27.9 Scaled Tags Per Million

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 26.5
2497 Male, age 66, unknown 28.2
2396 Male, age 61, right hemisphere 25.9
2032 Female, age 42, unknown 25.4
Centromedial thalamic nucleus
nTPM: 27.7
2279 Female, age 85, left hemisphere 31.4
2401 Male, age 76, right hemisphere 24.0
Habenula
nTPM: 22.1
2276 Male, age 66, unknown 26.0
2252 Male, age 62, unknown 22.5
2203 Male, age 61, left hemisphere 20.2
1957 Male, age 80, both hemispheres 19.7
Lateral geniculate body
nTPM: 25.7
2659 Male, age 66, unknown 30.6
2575 Female, age 94, right hemisphere 28.2
2857 Male, age 74, right hemisphere 27.1
2035 Female, age 72, unknown 26.3
1953 Male, age 62, unknown 25.7
2841 Male, age 80, both hemispheres 23.4
2399 Male, age 61, left hemisphere 23.2
2106 Female, age 67, right hemisphere 21.4
Lateral thalamic nuclei
nTPM: 29.4
2577 Male, age 74, both hemispheres 37.4
2661 Female, age 72, unknown 33.8
1903 Male, age 76, left hemisphere 26.9
2573 Female, age 94, left hemisphere 25.9
2765 Female, age 67, both hemispheres 23.2
Medial dorsal thalamic nucleus
nTPM: 25.6
2576 Male, age 74, both hemispheres 34.1
2660 Female, age 72, unknown 33.6
2039 Female, age 72, unknown 28.9
2492 Male, age 75, right hemisphere 27.9
2026 Male, age 62, unknown 26.8
2402 Female, age 67, both hemispheres 26.1
1930 Female, age 42, unknown 25.9
2283 Male, age 80, right hemisphere 24.0
2498 Male, age 66, unknown 23.5
1810 Male, age 48, unknown 22.9
1859 Male, age 76, both hemispheres 22.9
1971 Male, age 61, right hemisphere 19.3
2572 Female, age 94, right hemisphere 17.5
Medial geniculate body
nTPM: 26.8
2571 Male, age 75, right hemisphere 29.1
2049 Male, age 76, both hemispheres 28.4
1811 Female, age 42, unknown 28.1
2217 Female, age 72, unknown 28.1
2657 Male, age 74, right hemisphere 25.3
2207 Male, age 80, right hemisphere 24.9
2650 Female, age 94, left hemisphere 23.7
Nucleus reuniens
nTPM: 28.4
2210 Female, age 85, left hemisphere 34.9
2205 Male, age 80, left hemisphere 25.5
2212 Female, age 67, left hemisphere 24.8
Nucleus rhomboideus
nTPM: 28.5
2280 Female, age 85, left hemisphere 35.0
2213 Female, age 67, left hemisphere 26.0
2206 Male, age 80, both hemispheres 24.5
Posterior thalamic nucleus
nTPM: 28.2
2266 Male, age 76, right hemisphere 32.7
2495 Female, age 67, right hemisphere 30.3
2655 Male, age 74, right hemisphere 28.9
2649 Female, age 94, both hemispheres 20.7
Pulvinar
nTPM: 25.8
2582 Female, age 72, unknown 32.2
1899 Female, age 42, unknown 29.4
2496 Female, age 67, right hemisphere 27.8
2724 Male, age 74, right hemisphere 26.5
1929 Male, age 48, unknown 25.6
2214 Male, age 76, right hemisphere 25.6
1932 Male, age 80, right hemisphere 23.1
2398 Male, age 61, left hemisphere 23.1
2499 Male, age 66, unknown 22.7
1972 Male, age 62, unknown 21.7
Subthalamic nucleus
nTPM: 29.5
2216 Male, age 48, unknown 36.0
2406 Female, age 72, unknown 34.3
2056 Female, age 72, unknown 30.5
2779 Female, age 42, unknown 28.9
2124 Male, age 62, unknown 27.9
2275 Male, age 66, unknown 27.1
2658 Male, age 74, both hemispheres 25.8
2282 Male, age 61, both hemispheres 25.1
Ventral posterolateral thalamic nucleus
nTPM: 28.5
2581 Female, age 72, unknown 35.6
2578 Male, age 74, both hemispheres 33.6
2570 Male, age 75, right hemisphere 27.8
2397 Male, age 61, right hemisphere 25.2
2740 Male, age 76, right hemisphere 24.8
2197 Male, age 80, both hemispheres 23.9
Ventral posteromedial thalamic nucleus
nTPM: 27.6
2653 Male, age 74, both hemispheres 37.4
2127 Male, age 76, right hemisphere 30.0
2281 Male, age 75, right hemisphere 26.5
2758 Male, age 80, both hemispheres 22.3
2202 Male, age 61, left hemisphere 21.9
Ventral thalamic nuclei
nTPM: 27.9
2652 Male, age 74, left hemisphere 34.7
2858 Female, age 72, unknown 30.1
2204 Male, age 80, both hemispheres 29.5
1912 Female, age 42, unknown 27.7
2291 Female, age 72, unknown 27.5
2285 Male, age 62, unknown 26.7
2580 Male, age 66, unknown 26.1
1845 Male, age 48, unknown 24.8
1860 Male, age 76, both hemispheres 24.1
Zona incerta
nTPM: 31.5
2663 Female, age 72, unknown 40.2
2403 Male, age 62, unknown 32.0
2208 Male, age 80, right hemisphere 31.7
2215 Male, age 66, unknown 27.4
2822 Male, age 74, right hemisphere 26.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 27.9
FF:10154-103A1 76 years, female 27.9

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