HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.2 nTPM
HPA Brain:197.6 nTPM
GTEx:45.2 nTPM
FANTOM5:132.9 Scaled Tags Per Million
Pig:65.3 nTPM
Mouse:99.4 nTPM
Allen mouse:5.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 197.6
Sample id Sample description nTPM
Hippocampus
nTPM: 157.4
2621 Female, age 67, right hemisphere 196.0
1898 Male, age 80, left hemisphere 187.5
2148 Female, age 91, left hemisphere 165.4
1855 Male, age 76, left hemisphere 153.8
2529 Female, age 94, left hemisphere 121.1
1911 Female, age 85, right hemisphere 120.9
Dentate gyrus
nTPM: 150.8
1927 Female, age 91, both hemispheres 204.7
2530 Female, age 94, left hemisphere 170.1
2010 Male, age 76, both hemispheres 141.9
2531 Female, age 67, both hemispheres 139.5
2246 Female, age 85, both hemispheres 133.0
2528 Male, age 74, both hemispheres 115.4
Entorhinal gyrus
nTPM: 167.6
2613 Female, age 94, left hemisphere 235.8
2764 Male, age 80, right hemisphere 190.7
1938 Female, age 85, left hemisphere 173.3
1787 Male, age 76, left hemisphere 160.4
2686 Male, age 75, right hemisphere 148.0
2117 Female, age 91, right hemisphere 97.5
Hippocampus, CA1
nTPM: 178.0
2749 Male, age 80, left hemisphere 318.6
2527 Male, age 74, both hemispheres 172.5
1873 Female, age 85, both hemispheres 158.1
2082 Female, age 91, right hemisphere 132.4
2045 Male, age 76, both hemispheres 108.5
Hippocampus, CA2
nTPM: 157.7
1963 Male, age 80, left hemisphere 207.6
1892 Male, age 76, both hemispheres 184.0
2437 Female, age 94, left hemisphere 146.3
2113 Female, age 91, right hemisphere 142.1
1940 Female, age 85, left hemisphere 135.5
2249 Male, age 74, both hemispheres 130.9
Hippocampus, CA3
nTPM: 160.0
2137 Male, age 80, left hemisphere 257.5
2861 Female, age 67, both hemispheres 189.1
2620 Female, age 94, left hemisphere 156.7
1867 Male, age 76, both hemispheres 131.7
2436 Male, age 74, both hemispheres 122.4
1891 Female, age 85, both hemispheres 102.6
Parahippocampal cortex
nTPM: 161.9
2245 Female, age 91, both hemispheres 219.4
1850 Male, age 80, both hemispheres 196.8
2693 Female, age 94, both hemispheres 163.8
1990 Female, age 91, right hemisphere 163.4
2250 Female, age 67, right hemisphere 163.0
2622 Female, age 67, right hemisphere 162.4
1933 Female, age 85, both hemispheres 160.2
2532 Female, age 72, left hemisphere 150.7
2692 Male, age 74, both hemispheres 126.5
2018 Male, age 76, both hemispheres 112.3
Perirhinal gyrus
nTPM: 197.6
1847 Female, age 91, left hemisphere 253.4
1794 Male, age 80, right hemisphere 215.9
2521 Female, age 94, right hemisphere 207.4
1841 Female, age 85, right hemisphere 165.4
2848 Male, age 76, right hemisphere 145.8
Subiculum
nTPM: 123.9
1901 Male, age 80, both hemispheres 152.3
1977 Female, age 85, both hemispheres 144.5
2619 Male, age 74, both hemispheres 129.6
2438 Female, age 94, left hemisphere 123.5
2042 Male, age 76, both hemispheres 100.8
2729 Female, age 91, right hemisphere 92.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 45.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.2
Samples: 255

Max nTPM: 129.2
Min nTPM: 7.7
Std nTPM: 25.5
Median nTPM: 40.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 129.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 128.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 121.4
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 119.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 112.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 109.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 106.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 105.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 102.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 100.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 99.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 132.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 132.9
FF:10169-103B7 60 years, female 156.8
FF:10153-102I9 76 years, female 109.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 65.3
Pig sample Sample description nTPM
Subiculum
nTPM: 60.2
Samples: 4

Max nTPM: 77.5
Min nTPM: 50.9
Sample A Female 77.5
Sample B Female 52.9
Sample C Male 59.5
Sample D Male 50.9
Dorsal hippocampus
nTPM: 60.8
Samples: 4

Max nTPM: 76.2
Min nTPM: 45.5
Sample A Female 76.2
Sample B Female 74.4
Sample C Male 47.0
Sample D Male 45.5
Entorhinal cortex
nTPM: 65.3
Samples: 4

Max nTPM: 75.3
Min nTPM: 58.0
Sample A Female 75.3
Sample B Female 58.0
Sample C Male 68.7
Sample D Male 59.2
Ventral hippocampus
nTPM: 63.4
Samples: 4

Max nTPM: 79.8
Min nTPM: 41.9
Sample A Female 64.9
Sample B Female 41.9
Sample C Male 79.8
Sample D Male 66.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 99.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 99.4
Samples: 4

Max nTPM: 118.0
Min nTPM: 91.5
Sample A Male 91.5
Sample B Male 96.5
Sample C Female 91.6
Sample D Female 118.0
Hippocampal formation
nTPM: 94.3
Samples: 4

Max nTPM: 110.1
Min nTPM: 85.6
Sample A Male 85.6
Sample B Male 95.8
Sample C Female 110.1
Sample D Female 85.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 5.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.4
69735795 Antisense, RP_050503_03_E11, Mouse strain C57BL/6J (56 days, male) 9.9
70200848 Antisense, RP_050517_02_G02, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo