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  • MAPRE3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:128.1 nTPM
HPA Brain:143.0 nTPM
GTEx:128.1 nTPM
FANTOM5:381.6 Scaled Tags Per Million
Pig:148.8 nTPM
Mouse:115.4 nTPM
Allen mouse:18.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.0
Sample id Sample description nTPM
Amygdala
nTPM: 105.0
1987 Female, age 91, left hemisphere 127.3
2814 Male, age 76, right hemisphere 119.1
2517 Female, age 94, left hemisphere 117.5
2514 Male, age 75, right hemisphere 89.9
2695 Female, age 67, right hemisphere 71.1
Basal amygdala
nTPM: 143.0
2685 Female, age 94, left hemisphere 178.6
2243 Female, age 91, right hemisphere 176.1
2110 Male, age 80, left hemisphere 157.0
2609 Male, age 75, right hemisphere 118.0
1955 Male, age 76, both hemispheres 117.9
2827 Female, age 67, right hemisphere 110.3
Central amygdala
nTPM: 130.7
2239 Male, age 80, left hemisphere 160.5
2701 Female, age 91, right hemisphere 147.5
2826 Female, age 94, left hemisphere 147.0
2515 Male, age 75, right hemisphere 99.5
1905 Male, age 76, both hemispheres 99.2
Corticomedial amygdala
nTPM: 139.9
2829 Male, age 80, left hemisphere 186.0
2242 Female, age 91, right hemisphere 166.4
2535 Female, age 67, right hemisphere 146.7
2429 Female, age 94, left hemisphere 128.7
2240 Male, age 76, both hemispheres 115.8
2428 Male, age 75, right hemisphere 96.0
Lateral amygdala
nTPM: 115.9
2534 Female, age 94, left hemisphere 158.7
2255 Female, age 91, right hemisphere 141.3
2256 Male, age 80, left hemisphere 120.9
1883 Male, age 76, both hemispheres 117.0
2516 Male, age 75, right hemisphere 85.4
2830 Female, age 67, right hemisphere 72.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 128.1
Samples: 181

Max nTPM: 305.2
Min nTPM: 55.4
Std nTPM: 43.9
Median nTPM: 122.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 305.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 262.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 239.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 230.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 220.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 219.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 213.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 213.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 209.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 205.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 201.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 201.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 200.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 196.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 192.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 191.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 191.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 189.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 188.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 184.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 182.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 182.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 178.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 176.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 174.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 173.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 173.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 173.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 170.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 169.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 167.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 166.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 166.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 165.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 165.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 164.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 164.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 163.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 162.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 162.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 161.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 161.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 160.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 160.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 159.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 158.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 158.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 158.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 158.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 156.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 155.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 153.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 151.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 151.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 150.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 149.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 149.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 146.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 141.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 140.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 139.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 138.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 138.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 137.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 135.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 135.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 135.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 134.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 133.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 133.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 132.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 132.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 131.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 131.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 131.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 130.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 130.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 129.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 129.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 128.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 126.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 126.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 125.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 125.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 124.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 124.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 123.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 123.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 122.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 122.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 122.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 121.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 120.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 119.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 119.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 119.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 118.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 117.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 117.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 116.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 116.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 116.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 115.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 114.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 114.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 114.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 113.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 112.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 111.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 110.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 110.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 109.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 109.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 109.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 108.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 108.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 108.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 106.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 106.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 106.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 105.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 102.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 102.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 102.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 101.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 101.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 100.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 100.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 100.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 98.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 97.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 96.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 96.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 94.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 94.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 94.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 94.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 93.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 92.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 92.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 91.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 90.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 89.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 89.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 88.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 88.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 85.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 85.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 85.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 84.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 83.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 83.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 83.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 82.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 82.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 80.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 80.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 79.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 79.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 79.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 78.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 76.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 73.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 73.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 73.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 72.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 70.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 69.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 68.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 67.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 67.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 67.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 65.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 65.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 65.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 63.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 62.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 58.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 58.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 55.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

381.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 381.6
FF:10151-102I7 76 years, female 381.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.8
Pig sample Sample description nTPM
Amygdala
nTPM: 148.8
Samples: 4

Max nTPM: 218.4
Min nTPM: 110.4
Sample A Female 218.4
Sample B Female 110.4
Sample C Male 130.1
Sample D Male 136.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 115.4
Samples: 4

Max nTPM: 128.0
Min nTPM: 105.8
Sample A Male 120.3
Sample B Male 107.6
Sample C Female 128.0
Sample D Female 105.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.2
69015218 Antisense, RP_050310_02_E07, Mouse strain C57BL/6J (56 days, male) 18.2

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