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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • CD59
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:285.3 nTPM
FANTOM5:255.5 Scaled Tags Per Million
Pig:26.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA026494Antibody CAB001448
Glial cells LowNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 285.3
Samples: 300

Max nTPM: 646.8
Min nTPM: 111.6
Std nTPM: 89.8
Median nTPM: 268.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 646.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 621.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 580.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 579.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 547.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 541.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 534.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 530.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 527.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 521.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 512.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 507.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 500.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 493.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 486.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 484.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 477.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 475.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 458.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 446.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 442.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 441.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 430.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 427.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 425.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 416.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 407.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 406.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 403.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 403.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 403.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 401.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 401.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 398.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 398.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 397.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 395.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 395.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 394.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 390.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 379.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 376.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 373.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 369.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 368.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 365.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 363.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 358.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 358.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 356.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 355.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 355.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 350.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 349.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 349.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 344.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 342.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 340.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 338.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 337.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 336.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 334.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 333.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 332.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 332.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 328.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 327.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 326.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 324.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 324.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 324.2
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 323.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 323.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 322.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 320.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 319.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 319.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 318.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 317.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 314.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 313.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 313.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 311.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 311.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 310.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 308.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 307.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 304.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 303.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 303.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 303.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 303.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 303.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 301.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 301.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 301.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 300.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 300.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 299.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 298.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 298.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 298.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 297.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 297.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 296.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 296.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 296.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 295.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 293.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 291.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 291.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 290.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 290.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 288.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 287.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 286.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 286.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 285.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 284.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 284.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 284.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 282.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 281.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 280.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 279.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 278.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 278.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 277.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 277.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 277.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 277.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 276.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 275.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 275.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 274.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 273.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 273.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 273.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 272.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 271.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 270.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 270.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 270.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 270.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 270.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 269.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 269.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 269.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 269.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 268.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 268.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 268.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 268.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 267.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 267.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 267.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 267.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 265.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 265.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 264.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 262.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 262.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 262.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 261.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 261.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 260.6
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 260.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 259.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 259.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 259.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 259.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 259.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 258.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 258.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 258.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 257.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 257.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 256.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 254.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 254.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 254.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 252.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 251.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 247.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 247.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 247.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 246.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 244.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 244.7
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 244.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 240.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 240.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 239.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 239.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 239.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 239.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 238.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 236.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 235.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 235.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 233.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 233.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 233.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 232.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 232.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 231.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 230.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 230.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 229.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 228.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 228.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 228.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 227.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 227.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 227.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 227.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 226.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 226.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 225.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 225.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 224.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 224.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 224.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 224.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 223.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 223.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 223.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 223.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 223.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 222.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 220.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 219.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 219.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 219.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 219.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 218.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 216.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 214.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 213.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 213.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 212.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 211.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 211.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 210.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 209.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 209.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 209.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 208.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 206.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 206.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 205.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 204.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 204.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 203.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 203.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 203.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 203.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 203.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 202.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 202.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 202.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 202.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 201.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 200.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 200.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 198.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 198.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 198.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 198.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 197.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 196.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 194.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 192.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 192.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 191.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 191.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 190.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 190.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 189.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 188.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 187.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 187.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 186.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 186.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 184.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 182.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 182.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 181.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 181.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 180.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 179.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 177.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 173.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 171.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 164.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 144.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 140.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 124.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 123.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 111.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

255.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 255.5
FF:10164-103B2 76 years, female 255.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.7
Pig sample Sample description nTPM
Caudate
nTPM: 26.7
Samples: 4

Max nTPM: 38.3
Min nTPM: 20.6
Sample A Female 38.3
Sample B Female 22.5
Sample C Male 25.4
Sample D Male 20.6

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