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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:90.3 nTPM
HPA Brain:32.6 nTPM
GTEx:90.3 nTPM
FANTOM5:113.9 Scaled Tags Per Million
Pig:54.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 27.3
2816 Male, age 47, midline 30.0
1981 Female, age 72, midline 29.9
2194 Female, age 79, both hemispheres 26.9
2048 Male, age 55, midline 25.6
2565 Male, age 75, midline 24.3
Cervical spinal cord, dorsal horn
nTPM: 28.3
2296 Male, age 66, both hemispheres 36.5
2173 Female, age 72, unknown 35.3
1877 Male, age 55, unknown 27.5
2069 Male, age 47, both hemispheres 25.4
2297 Male, age 75, both hemispheres 23.2
2721 Male, age 90, both hemispheres 21.8
Cervical spinal cord, ventral horn
nTPM: 32.6
2098 Female, age 72, unknown 35.5
2809 Male, age 90, both hemispheres 34.8
2820 Female, age 79, both hemispheres 32.7
2068 Male, age 55, unknown 31.9
2480 Male, age 75, both hemispheres 31.1
2295 Male, age 66, both hemispheres 29.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 90.3
Samples: 204

Max nTPM: 159.6
Min nTPM: 39.5
Std nTPM: 21.5
Median nTPM: 89.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 159.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 143.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 141.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 139.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 136.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 136.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 136.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 131.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 128.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 127.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 126.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 126.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 126.6
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 126.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 126.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 126.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 125.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 125.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 124.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 119.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 118.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 117.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 116.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 116.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 116.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 116.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 116.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 115.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 115.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 115.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 114.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 111.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 111.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 111.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 110.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 110.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 110.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 109.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 108.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 108.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 107.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 107.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 105.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 105.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 105.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 105.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 104.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 104.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 104.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 103.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 102.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 102.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 102.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 102.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 101.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 101.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 101.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 100.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 100.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 100.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 100.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 100.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 99.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 99.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 99.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 99.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 99.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 98.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 98.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 98.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 98.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 98.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 98.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 98.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 98.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 97.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 96.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 95.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 95.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 95.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 95.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 94.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 94.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 93.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 93.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 93.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 93.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 93.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 93.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 92.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 92.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 92.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 92.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 91.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 90.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 90.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 90.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 90.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 89.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 89.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 89.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 89.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 89.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 89.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 88.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 87.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 87.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 87.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 87.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 86.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 86.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 86.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 86.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 85.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 85.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 85.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 84.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 84.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 84.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 83.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 83.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 83.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 83.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 82.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 82.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 82.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 81.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 81.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 81.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 81.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 80.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 80.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 80.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 79.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 79.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 79.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 79.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 79.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 79.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 79.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 78.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 78.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 78.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 78.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 77.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 77.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 76.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 76.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 76.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 75.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 75.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 75.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 75.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 74.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 74.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 74.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 73.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 73.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 73.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 73.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 72.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 72.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 71.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 71.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 70.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 69.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 69.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 68.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 68.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 68.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 68.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 68.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 68.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 67.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 66.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 66.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 66.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 66.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 65.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 65.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 64.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 64.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 64.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 63.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 62.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 62.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 62.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 61.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 61.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 61.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 61.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 61.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 60.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 58.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 55.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 55.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 50.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 50.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 49.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 46.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 45.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 44.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 39.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

113.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 113.9
FF:10181-103D1 60 years, female 118.0
FF:10159-103A6 76 years, female 109.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 50.8
Samples: 4

Max nTPM: 59.6
Min nTPM: 42.8
Sample A Female 49.5
Sample B Female 42.8
Sample C Male 59.6
Sample D Male 51.4
Ventral spinal cord
nTPM: 54.2
Samples: 4

Max nTPM: 59.7
Min nTPM: 51.9
Sample A Female 51.9
Sample B Female 52.3
Sample C Male 59.7
Sample D Male 53.0

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