MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.8 nTPM
HPA Brain:68.7 nTPM
GTEx:43.8 nTPM
FANTOM5:37.9 Scaled Tags Per Million
Pig:44.7 nTPM
Mouse:53.3 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 68.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.5
2828 Female, age 72, unknown 60.7
1870 Female, age 42, unknown 58.7
1833 Male, age 53, unknown 56.1
2666 Male, age 74, left hemisphere 55.3
2411 Female, age 72, unknown 55.0
2019 Male, age 18, unknown 54.0
1830 Male, age 51, unknown 53.5
1827 Male, age 72, unknown 52.3
2219 Male, age 76, both hemispheres 52.2
2586 Male, age 75, left hemisphere 47.1
Dorsal raphe nucleus
nTPM: 67.0
2298 Female, age 72, unknown 74.2
2047 Male, age 72, unknown 67.2
2016 Female, age 72, unknown 66.3
1828 Male, age 53, unknown 65.1
2750 Male, age 76, both hemispheres 62.0
Inferior colliculus
nTPM: 60.2
1890 Male, age 53, unknown 60.6
2849 Male, age 72, unknown 60.3
1848 Female, age 42, unknown 59.9
2097 Female, age 72, unknown 59.9
Median raphe nucleus
nTPM: 68.7
2220 Male, age 76, midline 68.7
Periaquaductal grey, anterior
nTPM: 57.9
1947 Male, age 18, unknown 61.7
2502 Female, age 75, unknown 56.2
1795 Male, age 51, unknown 55.8
Periaquaductal grey, dorsal
nTPM: 63.5
2850 Male, age 76, both hemispheres 78.0
1831 Male, age 72, unknown 61.5
2464 Female, age 72, unknown 57.7
1840 Male, age 53, unknown 57.0
Periaquaductal grey, lateral
nTPM: 60.9
2140 Male, age 76, both hemispheres 64.8
2053 Male, age 18, unknown 61.7
2272 Male, age 74, both hemispheres 56.2
Pretectal area
nTPM: 59.2
2667 Female, age 75, unknown 69.5
2224 Female, age 72, unknown 66.9
1944 Female, age 72, unknown 62.5
2273 Male, age 74, both hemispheres 62.1
1816 Male, age 51, unknown 60.0
1817 Female, age 42, unknown 59.2
1815 Male, age 53, unknown 56.7
2316 Male, age 76, right hemisphere 56.2
2825 Male, age 18, unknown 54.3
2407 Male, age 75, both hemispheres 53.1
2007 Male, age 72, unknown 51.2
Red nucleus
nTPM: 56.5
1821 Female, age 72, unknown 66.3
1904 Male, age 53, unknown 63.1
1954 Female, age 42, unknown 62.5
2769 Male, age 72, unknown 59.2
1865 Male, age 51, unknown 58.8
2503 Female, age 72, unknown 57.1
2725 Female, age 75, unknown 56.6
2227 Male, age 72, unknown 55.5
2823 Male, age 76, right hemisphere 54.7
2588 Male, age 74, left hemisphere 50.1
2785 Male, age 18, unknown 48.6
2584 Male, age 75, left hemisphere 45.7
Substantia nigra
nTPM: 60.1
2699 Male, age 18, unknown 68.5
1889 Female, age 72, unknown 64.3
2665 Male, age 74, both hemispheres 63.6
2241 Male, age 72, unknown 61.8
1851 Male, age 51, unknown 60.9
1916 Female, age 42, unknown 60.0
1941 Male, age 53, unknown 60.0
2409 Female, age 72, unknown 59.0
2583 Male, age 75, right hemisphere 51.6
2590 Female, age 75, unknown 51.4
Superior colliculus
nTPM: 55.1
1995 Male, age 72, unknown 62.3
1913 Female, age 42, unknown 59.6
2587 Male, age 74, left hemisphere 58.9
1839 Male, age 51, unknown 56.6
2261 Male, age 18, unknown 56.0
1796 Male, age 53, unknown 55.6
2668 Female, age 75, unknown 55.5
2087 Female, age 72, unknown 53.5
2664 Male, age 75, both hemispheres 47.2
1895 Male, age 76, right hemisphere 45.8
Ventral tegmental area
nTPM: 61.1
2223 Female, age 72, unknown 64.3
2410 Female, age 72, unknown 62.3
1915 Female, age 42, unknown 62.2
2021 Male, age 53, unknown 60.9
2218 Male, age 76, both hemispheres 59.2
1942 Male, age 51, unknown 57.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.8
Samples: 183

Max nTPM: 83.8
Min nTPM: 29.0
Std nTPM: 8.0
Median nTPM: 42.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 83.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 65.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 62.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 62.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 61.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 60.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 60.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 59.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 59.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 59.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 59.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.9
FF:10158-103A5 76 years, female 37.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.6
Samples: 4

Max nTPM: 41.2
Min nTPM: 27.8
Sample A Female 39.9
Sample B Female 41.2
Sample C Male 27.8
Sample D Male 29.3
Midbrain
nTPM: 38.6
Samples: 4

Max nTPM: 52.4
Min nTPM: 31.8
Sample A Female 52.4
Sample B Female 33.6
Sample C Male 36.6
Sample D Male 31.8
Periaqueductal gray
nTPM: 30.6
Samples: 3

Max nTPM: 31.6
Min nTPM: 30.1
Sample B Female 30.1
Sample C Male 30.2
Sample D Male 31.6
Superior colliculi
nTPM: 44.7
Samples: 4

Max nTPM: 62.5
Min nTPM: 33.8
Sample A Female 42.7
Sample B Female 62.5
Sample C Male 39.8
Sample D Male 33.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 53.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.3
Samples: 4

Max nTPM: 55.3
Min nTPM: 52.2
Sample A Male 52.4
Sample B Male 55.3
Sample C Female 53.3
Sample D Female 52.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68269634 Antisense, RP_041129_01_H11, Mouse strain C57BL/6J (56 days, male) 0.3

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