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  • SUMMARY

  • TISSUE

  • BRAIN

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:3746.4 nTPM
FANTOM5:1822.9 Scaled Tags Per Million
Pig:805.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041602Antibody CAB020769
Glial cells HighHigh
Neuronal cells HighHigh




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3746.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3746.4
Samples: 300

Max nTPM: 15291.6
Min nTPM: 1265.5
Std nTPM: 1747.2
Median nTPM: 3273.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 15291.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 10054.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 9702.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 9555.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 9475.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 9018.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 8904.9
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 8313.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 7912.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 7745.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 7685.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 7361.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 7254.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 6816.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 6761.8
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 6724.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 6665.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 6642.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 6563.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 6498.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 6497.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 6497.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 6477.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 6412.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 6250.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 6168.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 6145.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 6115.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 6031.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 6026.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 6016.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 6001.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 5912.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 5896.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 5857.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 5842.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 5648.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 5644.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 5608.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 5601.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 5556.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 5465.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 5451.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 5399.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5324.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 5276.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 5269.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 5236.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 5114.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 5066.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 5042.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 5031.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 5012.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 4970.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 4937.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 4921.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 4918.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 4871.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 4868.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 4823.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 4819.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 4803.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 4790.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 4759.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 4718.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 4682.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 4678.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 4671.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 4638.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 4634.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 4621.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 4531.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 4502.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 4500.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 4498.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 4474.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 4470.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 4464.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 4427.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 4417.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 4412.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 4407.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 4401.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 4368.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 4360.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 4319.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 4260.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 4255.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 4226.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 4215.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 4195.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 4177.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 4151.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4127.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 4125.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 4100.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 4047.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 4046.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 4045.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 4031.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 3983.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 3965.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 3964.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 3938.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 3903.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 3901.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 3896.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 3890.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 3878.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 3867.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 3843.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 3843.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 3841.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 3817.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 3793.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 3766.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 3761.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 3733.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 3717.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 3708.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 3684.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3669.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 3637.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 3615.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 3588.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 3585.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 3569.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 3559.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 3556.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 3555.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 3553.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 3541.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 3535.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 3498.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 3487.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 3468.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 3460.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 3459.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 3449.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 3446.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 3426.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 3417.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 3408.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 3388.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 3387.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 3358.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 3337.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 3327.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 3325.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 3275.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 3272.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 3268.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 3261.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 3260.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 3253.2
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 3240.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 3237.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 3233.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 3232.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3211.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 3210.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 3209.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3204.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 3203.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 3184.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 3176.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 3171.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 3150.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 3143.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 3142.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 3123.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 3112.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 3073.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 3072.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 3072.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 3048.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 3002.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 2999.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2995.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 2984.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 2983.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2981.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2980.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 2943.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2940.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2938.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 2932.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 2908.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2898.5
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 2897.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 2891.0
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 2890.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 2876.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 2864.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2848.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 2839.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 2835.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2831.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2829.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2811.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2806.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2802.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2801.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2790.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 2781.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2759.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2730.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 2725.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2722.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 2720.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2717.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 2707.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2706.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 2694.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 2692.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2684.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 2677.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2673.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 2660.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 2618.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2613.8
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 2612.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2612.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 2606.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 2595.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 2575.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 2571.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 2555.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 2546.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2537.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 2536.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 2520.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 2509.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 2503.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2481.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2473.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 2472.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2452.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2430.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 2422.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2415.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 2398.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 2388.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2386.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2384.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2374.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 2365.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2352.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 2347.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2308.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2277.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2248.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2240.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2225.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 2220.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2215.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2193.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2192.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 2191.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2190.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 2170.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2163.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 2143.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2132.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 2114.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2113.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 2106.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 2104.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2079.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 2070.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 2064.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2019.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1995.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1975.0
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1968.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1948.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1936.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1933.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1906.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1902.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1891.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1889.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1865.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1831.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1792.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1779.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1769.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1768.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1729.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1698.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1679.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1669.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1665.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1622.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1605.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1597.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1512.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1342.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1286.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1265.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1822.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1822.9
FF:10164-103B2 76 years, female 1822.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

805.5
Pig sample Sample description nTPM
Caudate
nTPM: 805.5
Samples: 4

Max nTPM: 920.8
Min nTPM: 676.6
Sample A Female 733.8
Sample B Female 890.8
Sample C Male 920.8
Sample D Male 676.6

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