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  • SUMMARY

  • TISSUE

  • BRAIN

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  • BLOOD

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  • PSMC5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:132.3 nTPM
FANTOM5:128.7 Scaled Tags Per Million
Pig:89.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA017871Antibody HPA064293
Glial cells HighNot detected
Neuronal cells MediumHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 132.3
Samples: 300

Max nTPM: 225.5
Min nTPM: 73.7
Std nTPM: 25.0
Median nTPM: 127.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 225.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 223.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 212.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 206.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 202.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 198.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 194.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 193.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 192.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 191.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 186.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 183.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 182.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 182.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 181.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 181.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 179.7
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 178.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 176.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 176.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 174.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 174.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 173.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 171.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 169.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 169.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 169.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 168.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 168.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 166.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 166.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 165.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 163.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 163.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 163.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 162.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 161.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 161.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 161.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 160.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 160.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 160.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 158.9
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 158.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 158.0
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 156.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 156.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 156.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 156.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 155.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 155.6
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 155.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 154.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 153.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 153.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 153.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 153.1
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 151.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 151.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 151.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 151.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 151.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 151.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 150.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 150.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 149.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 148.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 148.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 148.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 148.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 147.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 147.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 147.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 147.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 147.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 147.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 146.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 146.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 145.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 145.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 145.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 145.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 144.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 144.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 144.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 144.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 144.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 143.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 143.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 142.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 141.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 140.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 140.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 139.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 139.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 138.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 138.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 138.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 137.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 137.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 136.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 136.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 135.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 135.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 135.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 135.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 135.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 135.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 134.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 134.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 134.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 134.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 134.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 133.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 133.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 133.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 133.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 133.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 133.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 132.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 132.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 132.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 132.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 132.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 131.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 131.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 131.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 131.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 130.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 130.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 130.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 130.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 130.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 129.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 129.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 129.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 128.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 128.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 128.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 128.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 128.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 128.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 128.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 128.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 128.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 128.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 127.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 127.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 127.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 127.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 127.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 126.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 126.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 126.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 125.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 125.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 125.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 125.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 125.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 125.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 125.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 125.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 124.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 124.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 124.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 124.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 124.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 124.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 123.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 123.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 123.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 123.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 123.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 123.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 123.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 123.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 122.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 122.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 122.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 122.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 122.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 122.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 121.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 121.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 120.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 120.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 120.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 120.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 120.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 119.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 119.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 119.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 119.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 119.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 119.4
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 119.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 119.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 119.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 119.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 119.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 118.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 118.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 118.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 118.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 118.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 118.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 118.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 118.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 117.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 117.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 117.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 117.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 117.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 117.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 117.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 117.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 116.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 116.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 116.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 116.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 116.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 116.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 115.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 115.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 115.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 115.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 115.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 115.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 114.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 114.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 114.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 114.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 114.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 114.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 113.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 113.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 113.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 113.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 113.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 113.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 113.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 112.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 112.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 112.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 112.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 112.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 111.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 111.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 111.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 111.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 110.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 110.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 110.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 110.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 110.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 109.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 109.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 109.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 109.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 109.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 108.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 108.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 108.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 108.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 108.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 108.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 108.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 107.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 107.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 107.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 107.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 107.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 106.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 106.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 106.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 105.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 105.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 104.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 103.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 103.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 103.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 102.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 101.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 100.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 100.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 100.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 99.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 96.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 96.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 95.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 95.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 92.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 92.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 90.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 88.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 86.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 85.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 85.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 74.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 73.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

128.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 128.7
FF:10164-103B2 76 years, female 128.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.8
Pig sample Sample description nTPM
Caudate
nTPM: 89.9
Samples: 4

Max nTPM: 104.5
Min nTPM: 80.6
Sample A Female 85.3
Sample B Female 89.1
Sample C Male 104.5
Sample D Male 80.6

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