MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:165.4 nTPM
HPA Brain:72.7 nTPM
GTEx:165.4 nTPM
FANTOM5:132.2 Scaled Tags Per Million
Pig:149.7 nTPM
Mouse:292.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 72.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.5
2411 Female, age 72, unknown 67.9
1827 Male, age 72, unknown 66.8
1870 Female, age 42, unknown 66.0
2666 Male, age 74, left hemisphere 62.2
2586 Male, age 75, left hemisphere 59.7
2219 Male, age 76, both hemispheres 58.6
2019 Male, age 18, unknown 58.4
1833 Male, age 53, unknown 53.4
2828 Female, age 72, unknown 53.1
1830 Male, age 51, unknown 49.1
Dorsal raphe nucleus
nTPM: 60.3
1828 Male, age 53, unknown 64.7
2047 Male, age 72, unknown 63.3
2298 Female, age 72, unknown 63.3
2750 Male, age 76, both hemispheres 59.1
2016 Female, age 72, unknown 50.9
Inferior colliculus
nTPM: 59.3
2097 Female, age 72, unknown 62.3
1890 Male, age 53, unknown 60.0
2849 Male, age 72, unknown 57.7
1848 Female, age 42, unknown 57.1
Median raphe nucleus
nTPM: 68.0
2220 Male, age 76, midline 68.0
Periaquaductal grey, anterior
nTPM: 59.6
1947 Male, age 18, unknown 61.6
2502 Female, age 75, unknown 60.4
1795 Male, age 51, unknown 56.7
Periaquaductal grey, dorsal
nTPM: 53.1
1840 Male, age 53, unknown 60.8
2464 Female, age 72, unknown 52.3
2850 Male, age 76, both hemispheres 51.8
1831 Male, age 72, unknown 47.4
Periaquaductal grey, lateral
nTPM: 49.8
2140 Male, age 76, both hemispheres 51.4
2053 Male, age 18, unknown 50.8
2272 Male, age 74, both hemispheres 47.2
Pretectal area
nTPM: 60.4
1816 Male, age 51, unknown 77.1
1944 Female, age 72, unknown 71.7
2007 Male, age 72, unknown 70.9
1817 Female, age 42, unknown 70.2
1815 Male, age 53, unknown 62.0
2224 Female, age 72, unknown 56.9
2273 Male, age 74, both hemispheres 55.6
2667 Female, age 75, unknown 55.6
2825 Male, age 18, unknown 54.5
2316 Male, age 76, right hemisphere 46.2
2407 Male, age 75, both hemispheres 43.3
Red nucleus
nTPM: 59.8
1821 Female, age 72, unknown 72.7
2725 Female, age 75, unknown 71.7
2588 Male, age 74, left hemisphere 63.2
2503 Female, age 72, unknown 59.8
1865 Male, age 51, unknown 59.4
1954 Female, age 42, unknown 59.3
2785 Male, age 18, unknown 58.2
2769 Male, age 72, unknown 58.1
1904 Male, age 53, unknown 56.9
2227 Male, age 72, unknown 56.5
2823 Male, age 76, right hemisphere 53.0
2584 Male, age 75, left hemisphere 49.0
Substantia nigra
nTPM: 72.7
1916 Female, age 42, unknown 107.8
1851 Male, age 51, unknown 84.3
2241 Male, age 72, unknown 80.7
1889 Female, age 72, unknown 75.5
2699 Male, age 18, unknown 71.8
2665 Male, age 74, both hemispheres 70.3
1941 Male, age 53, unknown 69.1
2409 Female, age 72, unknown 62.7
2590 Female, age 75, unknown 56.2
2583 Male, age 75, right hemisphere 48.6
Superior colliculus
nTPM: 54.5
1895 Male, age 76, right hemisphere 60.7
2087 Female, age 72, unknown 60.7
2668 Female, age 75, unknown 59.9
2587 Male, age 74, left hemisphere 59.4
1796 Male, age 53, unknown 59.2
2261 Male, age 18, unknown 57.4
1913 Female, age 42, unknown 50.8
1839 Male, age 51, unknown 50.4
2664 Male, age 75, both hemispheres 45.5
1995 Male, age 72, unknown 41.4
Ventral tegmental area
nTPM: 65.4
1915 Female, age 42, unknown 79.1
2410 Female, age 72, unknown 79.0
2218 Male, age 76, both hemispheres 67.5
1942 Male, age 51, unknown 57.1
2223 Female, age 72, unknown 55.8
2021 Male, age 53, unknown 53.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 165.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 165.4
Samples: 183

Max nTPM: 276.1
Min nTPM: 94.8
Std nTPM: 33.8
Median nTPM: 158.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 276.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 275.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 273.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 251.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 247.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 246.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 245.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 238.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 237.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 234.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 223.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 132.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.2
FF:10158-103A5 76 years, female 132.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 149.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 149.8
Samples: 4

Max nTPM: 190.1
Min nTPM: 110.8
Sample A Female 190.1
Sample B Female 124.6
Sample C Male 173.5
Sample D Male 110.8
Midbrain
nTPM: 140.3
Samples: 4

Max nTPM: 169.9
Min nTPM: 116.6
Sample A Female 147.7
Sample B Female 169.9
Sample C Male 116.6
Sample D Male 126.9
Periaqueductal gray
nTPM: 144.6
Samples: 3

Max nTPM: 161.1
Min nTPM: 116.6
Sample B Female 156.0
Sample C Male 161.1
Sample D Male 116.6
Superior colliculi
nTPM: 146.9
Samples: 4

Max nTPM: 186.6
Min nTPM: 113.2
Sample A Female 186.6
Sample B Female 113.2
Sample C Male 144.1
Sample D Male 143.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 292.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 292.3
Samples: 4

Max nTPM: 301.1
Min nTPM: 283.2
Sample A Male 301.1
Sample B Male 295.8
Sample C Female 283.2
Sample D Female 289.2

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