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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • MT3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:5277.5 nTPM
FANTOM5:765.3 Scaled Tags Per Million
Pig:1770.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA004011Antibody CAB017779
Glial cells HighHigh
Neuronal cells HighMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5277.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5277.5
Samples: 300

Max nTPM: 18382.8
Min nTPM: 1539.4
Std nTPM: 2605.1
Median nTPM: 4788.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 18382.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 15736.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 15175.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 13977.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 13953.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 12968.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 12360.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 12324.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 11908.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 11215.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 10770.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 10363.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 10248.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 10198.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 10164.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 9956.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 9928.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 9910.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 9893.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 9803.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 9751.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 9624.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 9546.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 9150.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 9060.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 9054.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 8842.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 8830.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 8680.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 8626.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 8591.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 8589.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 8478.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 8476.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 8464.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 8454.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 8378.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 8202.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 8120.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 8102.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 8090.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 7986.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 7940.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 7934.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 7897.6
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 7897.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 7825.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 7700.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 7616.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 7552.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 7537.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 7519.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 7344.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 7282.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 7281.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 7212.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 7160.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 7159.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 7120.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 7067.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 6933.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 6885.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 6872.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 6838.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 6802.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 6740.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 6689.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 6664.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 6615.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 6599.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 6544.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 6511.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 6504.2
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 6492.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 6463.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 6428.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 6414.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 6391.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 6195.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 6193.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 6174.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 6170.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 6160.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 6151.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 6131.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 6072.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 6057.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 6035.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 6013.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 5970.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 5835.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 5802.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 5796.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 5772.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 5742.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 5728.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 5707.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 5705.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 5677.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 5645.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 5642.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 5622.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 5600.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 5578.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 5567.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 5549.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 5536.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 5484.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 5476.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 5476.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 5432.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 5417.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 5364.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 5359.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 5352.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 5338.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 5318.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 5313.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 5266.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 5262.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 5216.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 5178.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 5167.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 5111.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 5098.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 5086.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 5086.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 5075.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 5070.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 5065.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 5062.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 5056.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 5039.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 5007.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 4972.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 4966.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 4950.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 4937.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 4914.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 4906.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 4896.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 4882.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 4847.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 4844.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 4838.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 4830.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 4817.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 4814.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 4806.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 4796.8
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 4779.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 4767.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 4730.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 4729.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 4705.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 4694.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 4688.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 4642.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 4628.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 4581.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 4578.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 4576.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 4503.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 4500.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 4466.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 4452.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 4419.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 4391.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 4357.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 4340.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 4332.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 4294.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 4251.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 4236.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 4223.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 4190.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 4177.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 4148.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 4137.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 4132.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 4122.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 4105.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 4099.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 4091.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 4084.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 4071.0
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 4068.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 4055.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 4053.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 4052.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 4030.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 4021.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 4020.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 4016.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 4010.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 3953.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 3943.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 3934.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 3925.4
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 3924.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 3909.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 3904.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 3903.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 3894.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 3886.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 3863.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 3858.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 3827.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 3761.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 3759.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 3731.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 3714.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 3714.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 3709.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 3695.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 3693.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 3664.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3662.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 3661.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 3609.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 3602.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 3598.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 3579.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 3528.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 3516.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 3502.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 3455.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 3418.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 3408.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 3384.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 3355.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 3329.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 3327.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 3299.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 3291.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 3278.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 3273.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 3256.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 3158.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 3139.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 3130.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 3099.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 3085.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 3061.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 3050.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 3049.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 3044.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 3012.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 3005.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2983.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2940.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 2937.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2935.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2934.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 2916.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 2916.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 2912.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2843.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 2801.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 2780.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 2768.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 2750.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2734.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 2727.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2697.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2690.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2659.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 2647.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 2602.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 2563.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 2562.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 2561.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2547.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2534.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 2526.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 2515.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2503.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2494.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 2451.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 2406.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 2350.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2320.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 2294.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 2254.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2219.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 2201.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 2192.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2187.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 2161.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 2123.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 2087.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 2053.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1925.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1862.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1861.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1837.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1817.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1759.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1622.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1539.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

765.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 765.3
FF:10164-103B2 76 years, female 765.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1770.9
Pig sample Sample description nTPM
Caudate
nTPM: 1770.9
Samples: 4

Max nTPM: 2209.3
Min nTPM: 1490.2
Sample A Female 1670.3
Sample B Female 1713.6
Sample C Male 2209.3
Sample D Male 1490.2

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