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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:103.6 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:117.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA035873Antibody HPA035874Antibody CAB009794
Glial cells LowNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 103.6
Samples: 300

Max nTPM: 172.3
Min nTPM: 65.4
Std nTPM: 16.4
Median nTPM: 102.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 172.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 153.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 150.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 148.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 146.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 144.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 143.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 139.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 137.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 136.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 135.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 134.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 134.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 133.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 133.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 132.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 132.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 132.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 131.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 131.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 130.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 130.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 129.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 129.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 128.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 128.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 126.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 125.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 125.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 124.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 123.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 123.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 122.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 122.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 122.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 122.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 122.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 121.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 121.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 121.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 121.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 121.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 121.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 121.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 120.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 120.5
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 119.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 119.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 119.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 119.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 118.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 118.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 118.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 118.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 118.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 117.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 117.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 117.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 117.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 116.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 116.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 115.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 115.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 115.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 114.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 114.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 114.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 114.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 114.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 113.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 113.5
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 113.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 113.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 113.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 112.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 112.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 112.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 112.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 112.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 112.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 111.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 111.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 111.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 111.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 111.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 111.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 111.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 111.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 111.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 110.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 110.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 110.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 110.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 110.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 110.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 109.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 109.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 109.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 108.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 108.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 108.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 108.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 108.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 108.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 108.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 107.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 107.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 107.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 107.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 107.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 107.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 106.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 106.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 106.1
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 106.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 106.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 106.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 105.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 105.7
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 105.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 105.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 105.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 105.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 105.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 105.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 104.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 104.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 104.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 104.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 104.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 104.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 104.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 104.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 104.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 104.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 104.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 104.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 104.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 103.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 103.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 103.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 103.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 103.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 102.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 102.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 102.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 102.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 102.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 102.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 102.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 101.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 101.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 101.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 101.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 101.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 101.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 101.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 100.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 100.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 100.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 100.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 100.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 100.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 100.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 100.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 100.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 99.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 99.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 99.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 99.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 99.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 99.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 99.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 99.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 99.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 99.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 98.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 98.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 98.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 98.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 98.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 98.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 98.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 98.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 97.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 97.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 97.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 97.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 97.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 97.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 97.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 97.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 96.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 96.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 96.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 96.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 96.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 96.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 96.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 96.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 96.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 96.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 95.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 95.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 95.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 95.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 95.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 95.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 95.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 95.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 95.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 94.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 94.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 94.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 94.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 94.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 94.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 94.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 94.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 93.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 93.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 93.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 93.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 93.4
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 93.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 93.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 93.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 93.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 93.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 92.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 92.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 92.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 92.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 92.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 92.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 92.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 92.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 92.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 91.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 90.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 90.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 90.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 90.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 90.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 90.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 90.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 90.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 89.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 89.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 89.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 89.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 89.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 88.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 88.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 87.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 87.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 87.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 87.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 87.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 86.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 86.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 86.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 85.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 85.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 85.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 84.8
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 84.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 84.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 84.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 84.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 83.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 83.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 83.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 83.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 82.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 82.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 82.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 81.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 80.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 80.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 80.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 79.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 79.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 78.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 78.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 78.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 78.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 77.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 76.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 76.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 74.2
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 73.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 73.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 72.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 71.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 71.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 69.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 68.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 66.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 65.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 143.6
FF:10164-103B2 76 years, female 143.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.4
Pig sample Sample description nTPM
Caudate
nTPM: 117.4
Samples: 4

Max nTPM: 139.2
Min nTPM: 90.4
Sample A Female 90.4
Sample B Female 125.5
Sample C Male 139.2
Sample D Male 114.4

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