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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:251.5 nTPM
GTEx:251.5 nTPM
FANTOM5:118.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 251.5
Samples: 105

Max nTPM: 400.2
Min nTPM: 102.1
Std nTPM: 72.2
Median nTPM:
163_1 78 years, male 400.2
352_1 62 years, male 394.6
425_1 59 years, female 385.7
319_1 81 years, male 374.7
177_1 74 years, male 371.7
246_1 77 years, male 369.6
237_1 82 years, male 369.2
172_1 72 years, female 368.7
386_1 76 years, male 357.6
229_1 69 years, female 349.1
389_1 86 years, female 343.4
379_1 60 years, male 337.4
526_1 61 years, male 335.5
375_1 74 years, female 333.2
404_1 82 years, female 330.4
356_1 87 years, female 329.7
6_1 73 years, female 328.8
355_1 70 years, female 327.2
480_1 63 years, male 327.2
405_1 91 years, male 321.8
354_1 81 years, female 321.7
217_1 76 years, male 319.5
243_1 75 years, male 319.0
350_1 84 years, female 317.9
189_1 76 years, male 317.6
394_1 75 years, female 315.7
353_1 82 years, female 313.8
347_1 72 years, male 312.0
377_1 82 years, female 311.9
468_1 89 years, male 310.6
349_1 83 years, male 308.1
316_1 62 years, male 303.7
335_1 73 years, female 300.9
376_1 75 years, female 299.5
324_1 76 years, male 296.9
447_1 81 years, male 292.3
265_1 87 years, male 289.4
292_1 71 years, male 285.4
286_1 68 years, female 283.6
503_1 68 years, male 278.6
126_1 63 years, male 269.5
406_1 79 years, male 268.2
9_1 66 years, female 266.5
318_1 68 years, male 265.3
321_1 62 years, female 261.0
291_1 76 years, male 260.7
251_1 78 years, male 258.1
115_1 83 years, male 257.2
518_1 75 years, female 257.0
254_1 77 years, female 255.8
384_1 83 years, male 251.8
266_1 85 years, male 250.6
348_1 84 years, male 248.5
415_1 77 years, female 248.4
218_1 71 years, female 245.2
517_1 88 years, male 243.9
32_1 67 years, male 238.2
293_1 68 years, female 238.1
173_1 67 years, male 237.0
414_1 84 years, female 236.5
351_1 91 years, male 233.4
99_1 64 years, male 229.3
320_1 89 years, female 226.9
452_1 88 years, female 224.8
499_1 55 years, female 220.5
506_1 65 years, male 214.5
264_1 73 years, female 213.8
396_1 62 years, male 210.8
466_1 57 years, female 210.0
35_1 74 years, female 209.7
137_1 83 years, male 209.4
153_1 70 years, female 208.5
43_1 64 years, female 207.1
81_1 67 years, male 206.7
117_1 61 years, male 205.8
295_1 61 years, female 205.8
317_1 60 years, male 201.4
17_1 71 years, male 198.9
314_1 67 years, male 196.2
162_1 79 years, female 195.5
18_1 88 years, male 194.4
42_1 85 years, male 193.5
120_1 70 years, female 189.5
311_1 78 years, male 184.9
4_1 88 years, female 183.1
145_1 84 years, male 181.6
322_1 76 years, male 180.7
313_1 79 years, female 176.1
315_1 62 years, female 175.6
109_1 81 years, female 174.3
142_1 61 years, female 169.5
288_1 66 years, female 168.8
307_1 66 years, female 167.2
413_1 59 years, female 166.7
490_1 67 years, female 160.0
2_1 77 years, female 159.9
149_1 88 years, male 156.0
119_1 70 years, female 148.1
41_1 94 years, female 139.0
89_1 63 years, male 130.5
495_1 57 years, female 124.2
139_1 64 years, female 118.8
501_1 88 years, male 117.2
491_1 89 years, female 105.0
308_1 70 years, female 102.1
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

118.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 118.9
FF:10030-101E3 24-65 years, mixed 118.9

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