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TXNDC16
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  • TXNDC16
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:3.6 nTPM
GTEx:3.6 nTPM
FANTOM5:7.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA002543
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 3.6
Samples: 170

Max nTPM: 8.1
Min nTPM: 1.0
Std nTPM: 1.3
Median nTPM: 3.4
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 8.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 7.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 7.8
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 7.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 7.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 6.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 6.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 6.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 6.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 6.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 5.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 5.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 5.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 5.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 5.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 5.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 5.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 5.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 5.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 5.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 5.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 5.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 4.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 4.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 4.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 4.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 4.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 4.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 4.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 4.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 4.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 4.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 4.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 4.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 4.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 4.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 4.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 4.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 4.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 4.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 4.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 4.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 4.3
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 4.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 4.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 4.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 4.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 4.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 4.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 4.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 4.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 4.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 4.1
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 4.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 4.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 4.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 4.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 3.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 3.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 3.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 3.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 3.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 3.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 3.8
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 3.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 3.7
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 3.7
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 3.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 3.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 3.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 3.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 3.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 3.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 3.5
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 3.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 3.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 3.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 3.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 3.4
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 3.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 3.3
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 3.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 3.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 3.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 3.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 3.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 3.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 3.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 3.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 3.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 3.2
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 3.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 3.2
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 3.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 3.2
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 3.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 3.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 3.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 3.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 3.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 3.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 3.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 3.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 3.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 3.0
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 3.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 3.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 3.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 3.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 3.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 3.0
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2.9
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 2.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2.8
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 2.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2.8
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 2.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 2.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2.6
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2.5
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 2.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2.5
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 2.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 2.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 2.4
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2.4
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 2.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 2.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2.3
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 2.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 2.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2.2
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 2.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 2.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1.8
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 1.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1.5
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 1.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 7.3
FF:10204-103F6 68 years, female 7.3

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